5Z08

The crystal structure of kinetochore subunits Cenp-H/I/K triple complex


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.20 Å
  • R-Value Free: 0.230 
  • R-Value Work: 0.188 
  • R-Value Observed: 0.190 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Structural analysis of fungal CENP-H/I/K homologs reveals a conserved assembly mechanism underlying proper chromosome alignment.

Hu, L.Huang, H.Hei, M.Yang, Y.Li, S.Liu, Y.Dou, Z.Wu, M.Li, J.Wang, G.Z.Yao, X.Liu, H.He, X.Tian, W.

(2019) Nucleic Acids Res 47: 468-479

  • DOI: https://doi.org/10.1093/nar/gky1108
  • Primary Citation of Related Structures:  
    5Z07, 5Z08

  • PubMed Abstract: 

    The kinetochore is a proteinaceous complex that is essential for proper chromosome segregation. As a core member of the inner kinetochore, defects of each subunit in the CENP-H/I/K complex cause dysfunction of kinetochore that leads to chromosome mis-segregation and cell death. However, how the CENP-H/I/K complex assembles and promotes kinetochore function are poorly understood. We here determined the crystal structures of CENP-I N-terminus alone from Chaetomium thermophilum and its complex with CENP-H/K from Thielavia terrestris, and verified the identified interactions. The structures and biochemical analyses show that CENP-H and CENP-K form a heterodimer through both N- and C-terminal interactions. CENP-I integrates into the CENP-H/K complex by binding to the C-terminus of CENP-H, leading to formation of the ternary complex in which CENP-H is sandwiched between CENP-K and CENP-I. Our sequence comparisons and mutational analyses showed that this architecture of the CENP-H/I/K complex is conserved in human. Mutating the binding interfaces of CENP-H for either CENP-K or CENP-I significantly reduced their localizations at centromeres and induced massive chromosome alignment defects during mitosis, suggesting that the identified interactions are critical for CENP-H/I/K complex assembly at the centromere and kinetochore function. Altogether, our findings unveil the evolutionarily conserved assembly mechanism of the CENP-H/I/K complex that is critical for proper chromosome alignment.


  • Organizational Affiliation

    Key Laboratory of Molecular Biophysics of the Ministry of Education, College of Life Science and Technology, Huazhong University of Science and Technology, Wuhan 430074, China.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Cenp-I
A, B
229Thermochaetoides thermophila DSM 1495Mutation(s): 0 
Gene Names: CTHT_0061880
UniProt
Find proteins for G0SFF7 (Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719))
Explore G0SFF7 
Go to UniProtKB:  G0SFF7
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupG0SFF7
Sequence Annotations
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Cenp-K168Thermothielavioides terrestris NRRL 8126Mutation(s): 0 
Gene Names: THITE_2065850
UniProt
Find proteins for G2R3T1 (Thermothielavioides terrestris (strain ATCC 38088 / NRRL 8126))
Explore G2R3T1 
Go to UniProtKB:  G2R3T1
Entity Groups  
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UniProt GroupG2R3T1
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  • Reference Sequence
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Cenp-H45Thermothielavioides terrestris NRRL 8126Mutation(s): 0 
Gene Names: THITE_2113209
UniProt
Find proteins for G2R207 (Thermothielavioides terrestris (strain ATCC 38088 / NRRL 8126))
Explore G2R207 
Go to UniProtKB:  G2R207
Entity Groups  
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UniProt GroupG2R207
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.20 Å
  • R-Value Free: 0.230 
  • R-Value Work: 0.188 
  • R-Value Observed: 0.190 
  • Space Group: P 41
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 67.847α = 90
b = 67.847β = 90
c = 186.269γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
PHASERdata reduction
HKL-3000data scaling
PHASERphasing

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Natural Science Foundation of ChinaChina31500629
National Natural Science Foundation of ChinaChina31470763
National Natural Science Foundation of ChinaChina31500605

Revision History  (Full details and data files)

  • Version 1.0: 2018-10-31
    Type: Initial release
  • Version 1.1: 2019-05-15
    Changes: Data collection, Database references
  • Version 1.2: 2024-03-27
    Changes: Data collection, Database references