5YYS

Cryo-EM structure of L-fucokinase, GDP-fucose pyrophosphorylase (FKP)in Bacteroides fragilis

PDB DOI: https://doi.org/10.2210/pdb5YYS/pdb
EM Map EMD-6859: EMDB EMDataResource

Classification: TRANSFERASE
Organism(s): Bacteroides fragilis
Mutation(s): No

Deposited: 2017-12-11 Released: 2018-12-12
Deposition Author(s): Wang, J., Hu, H., Liu, Y., Zhou, Q., Wu, P., Yan, N., Wang, H.W., Wu, J.W., Sun, L.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 4.20 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

This is version 1.3 of the entry. See complete history.

Literature

Cryo-EM structure of L-fucokinase/GDP-fucose pyrophosphorylase (FKP) in Bacteroides fragilis.

Liu, Y., Hu, H., Wang, J., Zhou, Q., Wu, P., Yan, N., Wang, H.W., Wu, J.W., Sun, L.

(2019) Protein Cell 10: 365-369

PubMed: 30242642 Search on PubMedSearch on PubMed Central
DOI: https://doi.org/10.1007/s13238-018-0576-x
Primary Citation of Related Structures:
5YYS

Organizational Affiliation

Tsinghua-Peking Joint Center for Life Sciences, School of Life Sciences, Tsinghua University, Beijing, 100084, China.

Macromolecule Content

Total Structure Weight: 423.13 kDa
Atom Count: 24,044
Modelled Residue Count: 3,244
Deposited Residue Count: 3,796
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
L-fucokinase, L-fucose-1-P guanylyltransferase	A, B, C, D	949	Bacteroides fragilis	Mutation(s): 0
UniProt
Find proteins for Q58T34 (Bacteroides fragilis) Explore Q58T34 Go to UniProtKB: Q58T34
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q58T34
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 4.20 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2018-12-12

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2018-12-12
Type: Initial release
Version 1.1: 2019-05-01
Changes: Data collection, Database references
Version 1.2: 2019-11-06
Changes: Data collection, Other
Version 1.3: 2024-03-27
Changes: Data collection, Database references

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.