5YXA

Crystal structure of the C-terminal fragment of NS1 protein from yellow fever virus

Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.10 Å
  • R-Value Free: 0.258 
  • R-Value Work: 0.223 
  • R-Value Observed: 0.225 

wwPDB Validation   3D Report Full Report


This is version 1.3 of the entry. See complete history. 


Literature

Crystal structure of the C-terminal fragment of NS1 protein from yellow fever virus.

Wang, H., Han, M., Qi, J., Hilgenfeld, R., Luo, T., Shi, Y., Gao, G.F., Song, H.

(2017) Sci China Life Sci 60: 1403-1406


Macromolecules
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(by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Non-structural protein 1
A, B, C, D
181Yellow fever virusMutation(s): 0 
UniProt
Find proteins for Q1X881 (Yellow fever virus (isolate Angola/14FA/1971))
Explore Q1X881 
Go to UniProtKB:  Q1X881
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ1X881
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.10 Å
  • R-Value Free: 0.258 
  • R-Value Work: 0.223 
  • R-Value Observed: 0.225 
  • Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 58.291α = 90
b = 114.104β = 90
c = 139.215γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
HKL-2000data reduction
HKL-2000data scaling
PHASERphasing

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2018-01-24
    Type: Initial release
  • Version 1.1: 2018-01-31
    Changes: Database references
  • Version 1.2: 2018-02-07
    Changes: Structure summary
  • Version 1.3: 2023-11-22
    Changes: Data collection, Database references, Refinement description