Download MendeleyCrystal structure of a cold-adapted arginase from psychrophilic yeast, Glaciozyma antarctica
Murad, A.M.A., Abu-Bakar, F.D., Illias, R.M., Mahadi, N.M., Firdaus-Raih, M., Quay, D.H.X., Yusof, N.Y.To be published.
5YNL
Crystal structure of a cold-adapted arginase from psychrophilic yeast, Glaciozyma antarctica
- PDB DOI: https://doi.org/10.2210/pdb5YNL/pdb
- Classification: HYDROLASE
- Organism(s): Glaciozyma antarctica
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2017-10-24 Released: 2018-01-31
- Funding Organization(s): Ministry of Science Technology and Innovation (Malaysia)
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.35 Å
- R-Value Free: 0.266
- R-Value Work: 0.224
- R-Value Observed: 0.226
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Arginase | 362 | Glaciozyma antarctica | Mutation(s): 0 |  | |
UniProt | |||||
Find proteins for A0A2R2JFW7 (Glaciozyma antarctica) Explore A0A2R2JFW7 Go to UniProtKB: A0A2R2JFW7 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A0A2R2JFW7 | ||||
Sequence AnnotationsExpand | |||||
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Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.35 Å
- R-Value Free: 0.266
- R-Value Work: 0.224
- R-Value Observed: 0.226
- Space Group: H 3
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 91.193 | α = 90 |
| b = 91.193 | β = 90 |
| c = 107.779 | γ = 120 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| HKL-3000 | data reduction |
| HKL-3000 | data scaling |
| MrBUMP | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2018-01-31 Deposition Author(s): Yusof, N.Y., Quay, D.H.X., Illias, R.M., Firdaus-Raih, M., Abu-Bakar, F.D., Mahadi, N.M., Murad, A.M.A.
| Funding Organization | Location | Grant Number |
|---|---|---|
| Ministry of Science Technology and Innovation (Malaysia) | Malaysia | 02-05-20-SF0007 |
Revision History (Full details and data files)
- Version 1.0: 2018-01-31
Type: Initial release - Version 1.1: 2023-11-22
Changes: Data collection, Database references, Refinement description
