Download MendeleyCYP76AH1 from Salvia miltiorrhiza
Chang, Z.To be published.
5YLW
CYP76AH1 from Salvia miltiorrhiza
- PDB DOI: https://doi.org/10.2210/pdb5YLW/pdb
- Classification: OXIDOREDUCTASE
- Organism(s): Salvia miltiorrhiza
- Expression System: Escherichia coli-Thermus thermophilus shuttle vector pTRH1T
- Mutation(s): No
- Membrane Protein: Yes OPM
- Deposited: 2017-10-20 Released: 2018-10-24
- Funding Organization(s): The National Natural Science Foundation of China
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.70 Å
- R-Value Free: 0.168
- R-Value Work: 0.137
- R-Value Observed: 0.139
This is version 1.1 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Ferruginol synthase | 495 | Salvia miltiorrhiza | Mutation(s): 0 Gene Names: CYP76AH1 EC: 1.14.13.190 Membrane Entity: Yes |  | |
UniProt | |||||
Find proteins for S4UX02 (Salvia miltiorrhiza) Explore S4UX02 Go to UniProtKB: S4UX02 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | S4UX02 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| HEM Query on HEM | B [auth A] | PROTOPORPHYRIN IX CONTAINING FE C34 H32 Fe N4 O4 KABFMIBPWCXCRK-RGGAHWMASA-L |  | ||
| MN Query on MN | C [auth A] | MANGANESE (II) ION Mn WAEMQWOKJMHJLA-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.70 Å
- R-Value Free: 0.168
- R-Value Work: 0.137
- R-Value Observed: 0.139
- Space Group: P 31 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 108.776 | α = 90 |
| b = 108.776 | β = 90 |
| c = 105.99 | γ = 120 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
| MoRDa | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2018-10-24 Deposition Author(s): Chang, Z.
| Funding Organization | Location | Grant Number |
|---|---|---|
| The National Natural Science Foundation of China | China | 81773833 |
Revision History (Full details and data files)
- Version 1.0: 2018-10-24
Type: Initial release - Version 1.1: 2024-03-27
Changes: Data collection, Database references, Derived calculations, Refinement description
