Download MendeleyCrystal structure of Ofd2 from Schizosaccharomyces pombe at 1.80 A
Wang, J., Gao, Y.X., Guo, G.R., Teng, M.K., Niu, L.W.To be published.
5YLB
Crystal structure of Ofd2 from Schizosaccharomyces pombe at 1.80 A
- PDB DOI: https://doi.org/10.2210/pdb5YLB/pdb
- Classification: OXIDOREDUCTASE
- Organism(s): Schizosaccharomyces pombe 972h-
- Expression System: Escherichia coli 'BL21-Gold(DE3)pLysS AG
- Mutation(s): No
- Deposited: 2017-10-17 Released: 2018-10-24
- Funding Organization(s): Chinese Ministry of Science and Technology, Chinese National Natural Science Foundation
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.79 Å
- R-Value Free: 0.233
- R-Value Work: 0.185
- R-Value Observed: 0.188
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Uncharacterized protein P8A3.02c | 187 | Schizosaccharomyces pombe 972h- | Mutation(s): 0 Gene Names: SPAP8A3.02c |  | |
UniProt | |||||
Find proteins for Q9UT12 (Schizosaccharomyces pombe (strain 972 / ATCC 24843)) Explore Q9UT12 Go to UniProtKB: Q9UT12 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q9UT12 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| FE Query on FE | B [auth A] | FE (III) ION Fe VTLYFUHAOXGGBS-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.79 Å
- R-Value Free: 0.233
- R-Value Work: 0.185
- R-Value Observed: 0.188
- Space Group: I 2 2 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 70.506 | α = 90 |
| b = 80.386 | β = 90 |
| c = 81.996 | γ = 90 |
| Software Name | Purpose |
|---|---|
| HKL-2000 | data scaling |
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
| DENZO | data reduction |
| MOLREP | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2018-10-24 Deposition Author(s): Wang, J., Gao, Y.X., Guo, G.R., Zhu, Z.L., Teng, M.K., Niu, L.W.
| Funding Organization | Location | Grant Number |
|---|---|---|
| Chinese Ministry of Science and Technology | China | 2012CB917200 |
| Chinese Ministry of Science and Technology | China | 2011CBA00800 |
| Chinese National Natural Science Foundation | China | 31130018 |
| Chinese National Natural Science Foundation | China | 31170726 |
Revision History (Full details and data files)
- Version 1.0: 2018-10-24
Type: Initial release - Version 1.1: 2023-11-22
Changes: Data collection, Database references, Refinement description
