Download MendeleyAlpha-Oxidative Decarboxylation of Fatty Acids Catalysed by Cytochrome P450 Peroxygenases Yielding Shorter-Alkyl-Chain Fatty Acids
Onoda, H., Shoji, O., Suzuki, K., Sugimoto, H., Shiro, Y., Watanabe, Y.(2017) Catal Sci Technol
5YHJ
Cytochrome P450EX alpha (CYP152N1) wild-type with myristic acid
- PDB DOI: https://doi.org/10.2210/pdb5YHJ/pdb
- Classification: OXIDOREDUCTASE
- Organism(s): Exiguobacterium sp. AT1b
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2017-09-28 Released: 2017-12-06
- Funding Organization(s): Japan Society for the Promotion of Science (JSPS), The Ministry of Education,Culture,Sports,Science and Technology(MEXT)
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.30 Å
- R-Value Free: 0.248
- R-Value Work: 0.214
- R-Value Observed: 0.216
This is version 1.1 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Cytochrome P450 | 413 | Exiguobacterium sp. AT1b | Mutation(s): 0 Gene Names: EAT1b_2299 |  | |
UniProt | |||||
Find proteins for C4L2G9 (Exiguobacterium sp. (strain ATCC BAA-1283 / AT1b)) Explore C4L2G9 Go to UniProtKB: C4L2G9 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | C4L2G9 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| HEM Query on HEM | C [auth A], E [auth B] | PROTOPORPHYRIN IX CONTAINING FE C34 H32 Fe N4 O4 KABFMIBPWCXCRK-RGGAHWMASA-L |  | ||
| MYR Query on MYR | D [auth A], F [auth B] | MYRISTIC ACID C14 H28 O2 TUNFSRHWOTWDNC-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.30 Å
- R-Value Free: 0.248
- R-Value Work: 0.214
- R-Value Observed: 0.216
- Space Group: P 41
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 58.962 | α = 90 |
| b = 58.962 | β = 90 |
| c = 238.348 | γ = 90 |
| Software Name | Purpose |
|---|---|
| HKL-2000 | data collection |
| HKL-2000 | data scaling |
| PHENIX | refinement |
| PDB_EXTRACT | data extraction |
| HKL-2000 | data reduction |
| MOLREP | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2017-12-06 Deposition Author(s): Onoda, H., Shoji, O., Suzuki, K., Sugimoto, H., Shiro, Y., Watanabe, Y.
| Funding Organization | Location | Grant Number |
|---|---|---|
| Japan Society for the Promotion of Science (JSPS) | Japan | 16J02846 |
| The Ministry of Education,Culture,Sports,Science and Technology(MEXT) | Japan | 15H05806 |
| The Ministry of Education,Culture,Sports,Science and Technology(MEXT) | Japan | 17H03087 |
Revision History (Full details and data files)
- Version 1.0: 2017-12-06
Type: Initial release - Version 1.1: 2024-03-27
Changes: Author supporting evidence, Data collection, Database references, Derived calculations
