5Y81

NuA4 TEEAA sub-complex


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.70 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Architecture of the Saccharomyces cerevisiae NuA4/TIP60 complex

Wang, X.Ahmad, S.Zhang, Z.Cote, J.Cai, G.

(2018) Nat Commun 9: 1147-1147

  • DOI: https://doi.org/10.1038/s41467-018-03504-5
  • Primary Citation of Related Structures:  
    5Y81

  • PubMed Abstract: 

    The NuA4/TIP60 acetyltransferase complex is required for gene regulation, DNA repair and cell cycle progression. The limited structural information impeded understanding of NuA4/TIP60 assembly and regulatory mechanism. Here, we report the 4.7 Å cryo-electron microscopy (cryo-EM) structure of a NuA4/TIP60 TEEAA assembly (Tra1, Eaf1, Eaf5, actin and Arp4) and the 7.6 Å cryo-EM structure of a TEEAA-piccolo assembly (Esa1, Epl1, Yng2 and Eaf6). The Tra1 and Eaf1 constitute the assembly scaffold. The Eaf1 SANT domain tightly binds to the LBE and FATC domains of Tra1 by ionic interactions. The actin/Arp4 peripherally associates with Eaf1 HSA domain. The Eaf5/7/3 (TINTIN) and piccolo modules largely pack against the FAT and HEAT repeats of Tra1 and their association depends on Eaf1 N-terminal and HSA regions, respectively. These structures elucidate the detailed architecture and molecular interactions between NuA4 subunits and offer exciting insights into the scaffolding and regulatory mechanisms of Tra1 pseudokinase.


  • Organizational Affiliation

    Hefei National Laboratory for Physical Sciences at Microscale and School of Life Sciences, University of Science & Technology of China, Hefei, 230026, China. xuejuan@ustc.edu.cn.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Transcription-associated protein 1A [auth B]1,115Saccharomyces cerevisiae S288CMutation(s): 0 
UniProt
Find proteins for P38811 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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Go to UniProtKB:  P38811
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UniProt GroupP38811
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Chromatin modification-related protein EAF1B [auth C]336Saccharomyces cerevisiae S288CMutation(s): 0 
UniProt
Find proteins for Q06337 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Eaf1-disorder domainC [auth D]500Saccharomyces cerevisiaeMutation(s): 0 
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Chromatin modification-related protein EAF5D [auth H]279Saccharomyces cerevisiae S288CMutation(s): 0 
UniProt
Find proteins for P39995 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
Transcription-associated protein 1E [auth A]2,627Saccharomyces cerevisiae S288CMutation(s): 0 
UniProt
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
Actin-related protein 4490Saccharomyces cerevisiae S288CMutation(s): 0 
UniProt
Find proteins for P80428 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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Entity ID: 7
MoleculeChains Sequence LengthOrganismDetailsImage
Actin375Saccharomyces cerevisiae S288CMutation(s): 0 
UniProt
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Entity ID: 8
MoleculeChains Sequence LengthOrganismDetailsImage
Chromatin modification-related protein EAF1H [auth E]41Saccharomyces cerevisiae S288CMutation(s): 0 
UniProt
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Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.70 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Basic Research ProgramChina2014CB910700
the National Natural Science Foundation of ChinaChina31570726
the National Natural Science Foundation of ChinaChina31170694

Revision History  (Full details and data files)

  • Version 1.0: 2018-04-18
    Type: Initial release
  • Version 1.1: 2018-10-24
    Changes: Data collection, Refinement description
  • Version 1.2: 2019-11-06
    Changes: Data collection, Other