5Y2A
Crystal structure of Ostrinia furnacalis Group II chitinase catalytic domain 2
- PDB DOI: https://doi.org/10.2210/pdb5Y2A/pdb
- Classification: HYDROLASE
- Organism(s): Ostrinia furnacalis
- Expression System: Komagataella phaffii GS115
- Mutation(s): No 
- Deposited: 2017-07-24 Released: 2018-01-17 
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.90 Å
- R-Value Free: 0.186 
- R-Value Work: 0.167 
wwPDB Validation   3D Report Full Report
This is version 2.1 of the entry. See complete history. 
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
insect group II chitinase | 383 | Ostrinia furnacalis | Mutation(s): 0  EC: 3.2.1.14 | ||
UniProt | |||||
Find proteins for A0A221ZS22 (Ostrinia furnacalis) Explore A0A221ZS22  Go to UniProtKB:  A0A221ZS22 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A0A221ZS22 | ||||
Sequence AnnotationsExpand | |||||
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Oligosaccharides
Entity ID: 2 | |||||
---|---|---|---|---|---|
Molecule | Chains | Length | 2D Diagram | Glycosylation | 3D Interactions |
alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | C, D | 6 | N-Glycosylation | ||
Glycosylation Resources | |||||
GlyTouCan:  G60005GQ GlyCosmos:  G60005GQ GlyGen:  G60005GQ |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.90 Å
- R-Value Free: 0.186 
- R-Value Work: 0.167 
- Space Group: P 1 21 1
Unit Cell:
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 72.637 | α = 90 |
b = 90.654 | β = 116.41 |
c = 74.856 | γ = 90 |
Software Name | Purpose |
---|---|
PHENIX | refinement |
HKL-2000 | data scaling |
PDB_EXTRACT | data extraction |
Coot | model building |
PHENIX | phasing |
HKL-3000 | data reduction |
Entry History 
Deposition Data
Revision History (Full details and data files)
- Version 1.0: 2018-01-17
Type: Initial release - Version 1.1: 2018-01-24
Changes: Database references - Version 1.2: 2018-03-07
Changes: Database references - Version 2.0: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Atomic model, Data collection, Derived calculations, Structure summary - Version 2.1: 2023-11-22
Changes: Data collection, Database references, Derived calculations, Refinement description, Structure summary