5Y1U

Crystal structure of RBBP4 bound to AEBP2 RRK motif

PDB DOI: https://doi.org/10.2210/pdb5Y1U/pdb

Classification: GENE REGULATION
Organism(s): Homo sapiens
Expression System: Trichoplusia ni
Mutation(s): No

Deposited: 2017-07-21 Released: 2018-04-18
Deposition Author(s): Sun, A., Li, F., Wu, J., Shi, Y.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.14 Å
R-Value Free: 0.219
R-Value Work: 0.169
R-Value Observed: 0.171

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Structural and biochemical insights into human zinc finger protein AEBP2 reveals interactions with RBBP4

Sun, A., Li, F., Liu, Z., Jiang, Y., Zhang, J., Wu, J., Shi, Y.

(2017) Protein Cell

PubMed: 29134516 Search on PubMedSearch on PubMed Central
DOI: https://doi.org/10.1007/s13238-017-0483-6
Primary Citation of Related Structures:
5Y0U, 5Y1U

Organizational Affiliation

Hefei National Laboratory for Physical Sciences at Microscale and School of Life Sciences, University of Science and Technology of China, Hefei, 230027, China.

Macromolecule Content

Total Structure Weight: 106.23 kDa
Atom Count: 6,586
Modelled Residue Count: 777
Deposited Residue Count: 936
Unique protein chains: 2

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Histone-binding protein RBBP4	A, B	456	Homo sapiens	Mutation(s): 0 Gene Names: RBBP4, RBAP48
UniProt & NIH Common Fund Data Resources
Find proteins for Q09028 (Homo sapiens) Explore Q09028 Go to UniProtKB: Q09028
PHAROS: Q09028 GTEx: ENSG00000162521
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q09028
Sequence Annotations Expand
Reference Sequence

Find similar proteins by: Sequence | 3D Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Zinc finger protein AEBP2	C, D	12	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for Q6ZN18 (Homo sapiens) Explore Q6ZN18 Go to UniProtKB: Q6ZN18
PHAROS: Q6ZN18 GTEx: ENSG00000139154
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q6ZN18
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
SO4 Query on SO4 Download Ideal Coordinates CCD File SDF format, chain E [auth B] SDF format, chain F [auth D] MOL2 format, chain E [auth B] MOL2 format, chain F [auth D]	E [auth B], F [auth D]	SULFATE ION O₄ S QAOWNCQODCNURD-UHFFFAOYSA-L		Interactions Focus chain E [auth B] Focus chain F [auth D] Interactions & Density Focus chain E [auth B] Focus chain F [auth D]