5Y09

Crystal structure of Deg9 at 295 K

Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.45 Å
  • R-Value Free: 0.253 
  • R-Value Work: 0.206 
  • R-Value Observed: 0.208 

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This is version 1.1 of the entry. See complete history. 


Literature

Crystal structure of Deg9 at 295 K

Ouyang, M., Li, X.Y., Zhao, S., Zhang, L.X.

To be published.

Macromolecules
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(by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Protease Do-like 9
A, B
566Arabidopsis thalianaMutation(s): 0 
Gene Names: Deg9, DEGP9, At5g40200, MSN9.10, MSN9.100
EC: 3.4.21
UniProt
Find proteins for Q9FL12 (Arabidopsis thaliana)
Explore Q9FL12 
Go to UniProtKB:  Q9FL12
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9FL12
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.45 Å
  • R-Value Free: 0.253 
  • R-Value Work: 0.206 
  • R-Value Observed: 0.208 
  • Space Group: I 4
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 132.372α = 90
b = 132.372β = 90
c = 154.73γ = 90
Software Package:
Software NamePurpose
HKL-2000data collection
HKL-2000data scaling
PHASERphasing
PHENIXrefinement
PDB_EXTRACTdata extraction
HKL-2000data reduction

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2017-10-18
    Type: Initial release
  • Version 1.1: 2023-11-22
    Changes: Data collection, Database references, Refinement description