Download MendeleyCrystal structure of GH10 xylanase XYL10C from Bispora. sp MEY-1
You, S., Chen, C., Tu, T.To be published.
5XZO
Crystal structure of GH10 xylanase XYL10C from Bispora. sp MEY-1
- PDB DOI: https://doi.org/10.2210/pdb5XZO/pdb
- Classification: HYDROLASE
- Organism(s): Bispora sp. MEY-1
- Expression System: Komagataella phaffii GS115
- Mutation(s): No
- Deposited: 2017-07-13 Released: 2018-01-17
- Funding Organization(s): the National Natural Science Foundation of China
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.50 Å
- R-Value Free: 0.213
- R-Value Work: 0.188
- R-Value Observed: 0.189
This is version 1.2 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Beta-xylanase | 335 | Bispora sp. MEY-1 | Mutation(s): 0 Gene Names: xyl10C EC: 3.2.1.8 |  | |
UniProt | |||||
Find proteins for D0QF43 (Bispora sp. MEY-1) Explore D0QF43 Go to UniProtKB: D0QF43 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | D0QF43 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| NAG Query on NAG | C [auth A], D [auth A], E [auth A], F [auth B], G [auth B] | 2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.50 Å
- R-Value Free: 0.213
- R-Value Work: 0.188
- R-Value Observed: 0.189
- Space Group: C 1 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 135.457 | α = 90 |
| b = 83.262 | β = 94.49 |
| c = 65.279 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| xia2 | data reduction |
| xia2 | data scaling |
| PHASER | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2018-01-17 Deposition Author(s): You, S., Chen, C., Tu, T., Guo, R.T., Luo, H., Yao, B.
| Funding Organization | Location | Grant Number |
|---|---|---|
| the National Natural Science Foundation of China | China | 31472127 |
Revision History (Full details and data files)
- Version 1.0: 2018-01-17
Type: Initial release - Version 1.1: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Data collection, Derived calculations, Structure summary - Version 1.2: 2023-11-22
Changes: Data collection, Database references, Refinement description, Structure summary
