Download MendeleyStructure of TsrD from Streptomyces laurentii
Song, Y., Lin, Z., Deng, W., Liu, W.To be published.
5X7L
Structure of TsrD from Streptomyces laurentii
- PDB DOI: https://doi.org/10.2210/pdb5X7L/pdb
- Classification: ISOMERASE
- Organism(s): Streptomyces laurentii
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2017-02-27 Released: 2018-03-07
- Funding Organization(s): NSFC, STCSM, CAS
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.22 Å
- R-Value Free: 0.166
- R-Value Work: 0.151
- R-Value Observed: 0.151
wwPDB Validation 3D Report Full Report
This is version 1.0 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| TsrD | 138 | Streptomyces laurentii | Mutation(s): 0 Gene Names: tsrD |  | |
UniProt | |||||
Find proteins for C0JRY3 (Streptomyces laurentii) Explore C0JRY3 Go to UniProtKB: C0JRY3 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | C0JRY3 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| IPA Query on IPA | C [auth A], D [auth A], E [auth A], F [auth B], G [auth B] | ISOPROPYL ALCOHOL C3 H8 O KFZMGEQAYNKOFK-UHFFFAOYSA-N |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.22 Å
- R-Value Free: 0.166
- R-Value Work: 0.151
- R-Value Observed: 0.151
- Space Group: P 32 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 54.232 | α = 90 |
| b = 54.232 | β = 90 |
| c = 199.952 | γ = 120 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| HKL-3000 | data processing |
Entry History & Funding Information
Deposition Data
| Funding Organization | Location | Grant Number |
|---|---|---|
| NSFC | China | 31430005, 21520102004, 21472231 and 21621002 |
| STCSM | China | 14JC1407700 and 15JC1400400 |
| CAS | China | XDB20020200 |
Revision History (Full details and data files)
- Version 1.0: 2018-03-07
Type: Initial release
