Download MendeleyCrystal structure of pseudorabies virus glycoprotein D
Li, A., Lu, G., Qi, J., Wu, L., Tian, K., Luo, T., Shi, Y., Yan, J., Gao, G.F.To be published.
5X5W
Crystal structure of pseudorabies virus glycoprotein D
- PDB DOI: https://doi.org/10.2210/pdb5X5W/pdb
- Classification: VIRAL PROTEIN/CELL ADHESION
- Organism(s): Suid alphaherpesvirus 1, Sus scrofa
- Expression System: Escherichia coli K-12
- Mutation(s): No
- Deposited: 2017-02-17 Released: 2017-04-26
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.70 Å
- R-Value Free: 0.266
- R-Value Work: 0.238
- R-Value Observed: 0.239
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| GD | 402 | Suid alphaherpesvirus 1 | Mutation(s): 0 Gene Names: US6 |  | |
UniProt | |||||
Find proteins for G3G933 (Suid alphaherpesvirus 1) Explore G3G933 Go to UniProtKB: G3G933 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | G3G933 | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Nectin-1 | 107 | Sus scrofa | Mutation(s): 0 Gene Names: NECTIN1, HVEC, PRR1, PVRL1 |  | |
UniProt | |||||
Find proteins for Q9GL76 (Sus scrofa) Explore Q9GL76 Go to UniProtKB: Q9GL76 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q9GL76 | ||||
Sequence AnnotationsExpand | |||||
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Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.70 Å
- R-Value Free: 0.266
- R-Value Work: 0.238
- R-Value Observed: 0.239
- Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 79.945 | α = 90 |
| b = 98.11 | β = 90 |
| c = 128.395 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| HKL-3000 | data reduction |
| HKL-3000 | data scaling |
| PHASER | phasing |
Entry History
Deposition Data
Revision History (Full details and data files)
- Version 1.0: 2017-04-26
Type: Initial release - Version 1.1: 2023-11-22
Changes: Data collection, Database references, Refinement description
