5WIR

Structure of the TRF1-TERB1 interface


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.10 Å
  • R-Value Free: 0.210 
  • R-Value Work: 0.179 
  • R-Value Observed: 0.181 

wwPDB Validation   3D Report Full Report


This is version 1.4 of the entry. See complete history


Literature

Dissecting the telomere-inner nuclear membrane interface formed in meiosis.

Pendlebury, D.F.Fujiwara, Y.Tesmer, V.M.Smith, E.M.Shibuya, H.Watanabe, Y.Nandakumar, J.

(2017) Nat Struct Mol Biol 24: 1064-1072

  • DOI: https://doi.org/10.1038/nsmb.3493
  • Primary Citation of Related Structures:  
    5WIR

  • PubMed Abstract: 

    Tethering telomeres to the inner nuclear membrane (INM) allows homologous chromosome pairing during meiosis. The meiosis-specific protein TERB1 binds the telomeric protein TRF1 to establish telomere-INM connectivity and is essential for mouse fertility. Here we solve the structure of the human TRF1-TERB1 interface to reveal the structural basis for telomere-INM linkage. Disruption of this interface abrogates binding and compromises telomere-INM attachment in mice. An embedded CDK-phosphorylation site within the TRF1-binding region of TERB1 provides a mechanism for cap exchange, a late-pachytene phenomenon involving the dissociation of the TRF1-TERB1 complex. Indeed, further strengthening this interaction interferes with cap exchange. Finally, our biochemical analysis implicates distinct complexes for telomere-INM tethering and chromosome-end protection during meiosis. Our studies unravel the structure, stoichiometry, and physiological implications underlying telomere-INM tethering, thereby providing unprecedented insights into the unique function of telomeres in meiosis.


  • Organizational Affiliation

    Department of Molecular, Cellular, and Developmental Biology, University of Michigan, Ann Arbor, Michigan, USA.


Macromolecules

Find similar proteins by:  Sequence   |   3D Structure  

Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
TERB1-TBMA [auth D],
C
15Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for Q8NA31 (Homo sapiens)
Explore Q8NA31 
Go to UniProtKB:  Q8NA31
PHAROS:  Q8NA31
GTEx:  ENSG00000249961 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ8NA31
Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Telomeric repeat-binding factor 1B,
D [auth A]
205Homo sapiensMutation(s): 0 
Gene Names: TERF1PIN2TRBF1TRFTRF1
UniProt & NIH Common Fund Data Resources
Find proteins for P54274 (Homo sapiens)
Explore P54274 
Go to UniProtKB:  P54274
PHAROS:  P54274
GTEx:  ENSG00000147601 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP54274
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.10 Å
  • R-Value Free: 0.210 
  • R-Value Work: 0.179 
  • R-Value Observed: 0.181 
  • Space Group: P 64
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 161.72α = 90
b = 161.72β = 90
c = 45.17γ = 120
Software Package:
Software NamePurpose
PHENIXrefinement
iMOSFLMdata reduction
Aimlessdata scaling
MOLREPphasing

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Cancer Institute (NIH/NCI)United StatesR00CA167644
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesR01GM120094
National Institutes of Health/National Institute on Aging (NIH/NIA)United StatesR01AG050509

Revision History  (Full details and data files)

  • Version 1.0: 2017-10-18
    Type: Initial release
  • Version 1.1: 2017-11-15
    Changes: Database references
  • Version 1.2: 2017-12-20
    Changes: Database references
  • Version 1.3: 2019-12-04
    Changes: Author supporting evidence
  • Version 1.4: 2023-10-04
    Changes: Data collection, Database references, Refinement description