Download MendeleyCrystal structure of beta-galactosidase from Bifidobacterium adolescentis
Chang, C., Cuff, M., Tesar, C., Endres, M., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)To be published.
5VYM
Crystal structure of beta-galactosidase from Bifidobacterium adolescentis
- PDB DOI: https://doi.org/10.2210/pdb5VYM/pdb
- Classification: HYDROLASE
- Organism(s): Bifidobacterium adolescentis ATCC 15703
- Expression System: Escherichia coli 'BL21-Gold(DE3)pLysS AG
- Mutation(s): No
- Deposited: 2017-05-25 Released: 2017-08-02
- Funding Organization(s): National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.46 Å
- R-Value Free: 0.226
- R-Value Work: 0.181
- R-Value Observed: 0.185
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Beta-galactosidase BgaB | 232 | Bifidobacterium adolescentis ATCC 15703 | Mutation(s): 0 Gene Names: bgaB, bgaLII, BAD_1401 EC: 3.2.1.23 |  | |
UniProt | |||||
Find proteins for A1A399 (Bifidobacterium adolescentis (strain ATCC 15703 / DSM 20083 / NCTC 11814 / E194a)) Explore A1A399 Go to UniProtKB: A1A399 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A1A399 | ||||
Sequence AnnotationsExpand | |||||
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Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.46 Å
- R-Value Free: 0.226
- R-Value Work: 0.181
- R-Value Observed: 0.185
- Space Group: P 61 2 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 90.549 | α = 90 |
| b = 90.549 | β = 90 |
| c = 278 | γ = 120 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| SCALEPACK | data scaling |
| PDB_EXTRACT | data extraction |
| HKL-3000 | data reduction |
| HKL-3000 | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2017-08-02 Deposition Author(s): Chang, C., Cuff, M., Tesar, C., Endres, M., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
| Funding Organization | Location | Grant Number |
|---|---|---|
| National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) | United States | GM115586 |
Revision History (Full details and data files)
- Version 1.0: 2017-08-02
Type: Initial release - Version 1.1: 2020-01-01
Changes: Author supporting evidence - Version 1.2: 2023-10-04
Changes: Data collection, Database references, Refinement description
