Download Mendeley2.55 A resolution structure of IpaD from Shigella flexneri in complex with single-domain antibody JMK-H2
Barta, M.L., Lovell, S., Battaile, K.P., Picking, W.D., Picking, W.L.To be published.
5VXK
2.55 A resolution structure of IpaD from Shigella flexneri in complex with single-domain antibody JMK-H2
- PDB DOI: https://doi.org/10.2210/pdb5VXK/pdb
- Classification: IMMUNE SYSTEM
- Organism(s): Vicugna pacos, Shigella flexneri
- Expression System: Escherichia coli
- Mutation(s): Yes
- Deposited: 2017-05-23 Released: 2017-08-30
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.55 Å
- R-Value Free: 0.273
- R-Value Work: 0.202
- R-Value Observed: 0.205
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| single-domain antibody JMK-H2 | A [auth B] | 155 | Vicugna pacos | Mutation(s): 0 |  |
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Invasin IpaD | B [auth A] | 289 | Shigella flexneri | Mutation(s): 1 Gene Names: ipaD, CP0126 |  |
UniProt | |||||
Find proteins for P18013 (Shigella flexneri) Explore P18013 Go to UniProtKB: P18013 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P18013 | ||||
Sequence AnnotationsExpand | |||||
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Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.55 Å
- R-Value Free: 0.273
- R-Value Work: 0.202
- R-Value Observed: 0.205
- Space Group: I 2 2 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 56.641 | α = 90 |
| b = 107.913 | β = 90 |
| c = 174.319 | γ = 90 |
| Software Name | Purpose |
|---|---|
| Aimless | data scaling |
| PHENIX | refinement |
| PDB_EXTRACT | data extraction |
| PHASER | phasing |
Entry History
Deposition Data
- Released Date: 2017-08-30 Deposition Author(s): Barta, M.L., Lovell, S., Battaile, K.P., Picking, W.D., Picking, W.L.
Revision History (Full details and data files)
- Version 1.0: 2017-08-30
Type: Initial release - Version 1.1: 2023-10-04
Changes: Data collection, Database references, Refinement description
