Download MendeleyStructural studies of the Tudor domain from the Bombyx homolog of Drosophila PAPI: Implication to piRNA biogenesis
Hubbard, P.A., Pan, X., Ohtaki, A., McNally, R., Honda, S., Kirino, Y., Murali, R.To be published.
5VQG
Crystal structure of the extended Tudor domain from BmPAPI
- PDB DOI: https://doi.org/10.2210/pdb5VQG/pdb
- Classification: RNA BINDING PROTEIN
- Organism(s): Bombyx mori
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2017-05-08 Released: 2017-06-14
- Funding Organization(s): National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.60 Å
- R-Value Free: 0.277
- R-Value Work: 0.201
- R-Value Observed: 0.206
wwPDB Validation 3D Report Full Report
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Tudor and KH domain-containing protein homolog | 237 | Bombyx mori | Mutation(s): 0 Gene Names: PAPI |  | |
UniProt | |||||
Find proteins for H9JD76 (Bombyx mori) Explore H9JD76 Go to UniProtKB: H9JD76 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | H9JD76 | ||||
Sequence AnnotationsExpand | |||||
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Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.60 Å
- R-Value Free: 0.277
- R-Value Work: 0.201
- R-Value Observed: 0.206
- Space Group: P 32 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 63.56 | α = 90 |
| b = 63.56 | β = 90 |
| c = 100.74 | γ = 120 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| iMOSFLM | data reduction |
| XDS | data scaling |
| PHENIX | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2017-06-14 Deposition Author(s): Hubbard, P.A., Pan, X., Ohtaki, A., McNally, R., Honda, S., Kirino, Y., Murali, R.
| Funding Organization | Location | Grant Number |
|---|---|---|
| National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) | United States | GM106047 |
Revision History (Full details and data files)
- Version 1.0: 2017-06-14
Type: Initial release - Version 1.1: 2017-09-13
Changes: Author supporting evidence - Version 1.2: 2020-01-01
Changes: Author supporting evidence - Version 1.3: 2023-10-04
Changes: Data collection, Database references, Refinement description
