Download MendeleyCrystal structure of a putative UBL domain of USP9X
Chern, Y., Dong, A., Hou, F., Li, Y., Tempel, W., Bountra, C., Arrowsmith, C.H., Edwards, A.M., Tong, Y., Structural Genomics Consortium (SGC)To be published.
5VBD
Crystal structure of a putative UBL domain of USP9X
- PDB DOI: https://doi.org/10.2210/pdb5VBD/pdb
- Classification: SIGNALING PROTEIN
- Organism(s): Homo sapiens
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2017-03-29 Released: 2017-04-26
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.50 Å
- R-Value Free: 0.236
- R-Value Work: 0.227
- R-Value Observed: 0.228
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| USP9X | 109 | Homo sapiens | Mutation(s): 0 Gene Names: USP9X, hCG_18381 |  | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q93008 (Homo sapiens) Explore Q93008 Go to UniProtKB: Q93008 | |||||
PHAROS: Q93008 GTEx: ENSG00000124486 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q93008 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| UNX Query on UNX | B [auth A], C [auth A], D [auth A] | UNKNOWN ATOM OR ION X |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.50 Å
- R-Value Free: 0.236
- R-Value Work: 0.227
- R-Value Observed: 0.228
- Space Group: C 2 2 21
- Diffraction Data: https://doi.org/10.18430/M35VBD
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 46.723 | α = 90 |
| b = 125.294 | β = 90 |
| c = 29.546 | γ = 90 |
| Software Name | Purpose |
|---|---|
| SCALEPACK | data scaling |
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
| Arcimboldo | phasing |
| Coot | model building |
| HKL-3000 | data reduction |
Entry History
Deposition Data
- Released Date: 2017-04-26 Deposition Author(s): Dong, A., Chern, Y., Hou, F., Li, Y., Tempel, W., Bountra, C., Arrowsmith, C.H., Edwards, A.M., Tong, Y., Structural Genomics Consortium (SGC)
Revision History (Full details and data files)
- Version 1.0: 2017-04-26
Type: Initial release - Version 1.1: 2024-03-06
Changes: Data collection, Database references
