Download Mendeley2.35 angstrom crystal structure of P97V 3-hydroxyanthranilate-3,4-dioxygenase from Cupriavidus metallidurans
Dornevil, K., Liu, F., Liu, A.To be published.
5V27
2.35 angstrom crystal structure of P97V 3-hydroxyanthranilate-3,4-dioxygenase from Cupriavidus metallidurans
- PDB DOI: https://doi.org/10.2210/pdb5V27/pdb
- Classification: OXIDOREDUCTASE
- Organism(s): Cupriavidus metallidurans CH34
- Expression System: Escherichia coli
- Mutation(s): Yes
- Deposited: 2017-03-02 Released: 2018-03-07
- Funding Organization(s): National Science Foundation (NSF, United States), National Institutes of Health/National Institute of Mental Health (NIH/NIMH)
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.35 Å
- R-Value Free: 0.274
- R-Value Work: 0.209
- R-Value Observed: 0.212
wwPDB Validation 3D Report Full Report
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 3-hydroxyanthranilate 3,4-dioxygenase | 201 | Cupriavidus metallidurans CH34 | Mutation(s): 1 Gene Names: nbaC, Rmet_5193 EC: 1.13.11.6 |  | |
UniProt | |||||
Find proteins for Q1LCS4 (Cupriavidus metallidurans (strain ATCC 43123 / DSM 2839 / NBRC 102507 / CH34)) Explore Q1LCS4 Go to UniProtKB: Q1LCS4 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q1LCS4 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| TRS Query on TRS | D [auth A] | 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL C4 H12 N O3 LENZDBCJOHFCAS-UHFFFAOYSA-O |  | ||
| FE2 Query on FE2 | B [auth A], C [auth A] | FE (II) ION Fe CWYNVVGOOAEACU-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.35 Å
- R-Value Free: 0.274
- R-Value Work: 0.209
- R-Value Observed: 0.212
- Space Group: P 65 2 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 58.032 | α = 90 |
| b = 58.032 | β = 90 |
| c = 231.868 | γ = 120 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| DENZO | data collection |
| SCALEPACK | data scaling |
| PDB_EXTRACT | data extraction |
| DENZO | data reduction |
| PHENIX | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2018-03-07 Deposition Author(s): Dornevil, K., Liu, F., Liu, A.
| Funding Organization | Location | Grant Number |
|---|---|---|
| National Science Foundation (NSF, United States) | United States | CHE-1623856 |
| National Institutes of Health/National Institute of Mental Health (NIH/NIMH) | United States | R21MH107985 |
Revision History (Full details and data files)
- Version 1.0: 2018-03-07
Type: Initial release - Version 1.1: 2018-04-18
Changes: Data collection - Version 1.2: 2019-11-27
Changes: Author supporting evidence - Version 1.3: 2023-10-04
Changes: Data collection, Database references, Derived calculations, Refinement description
