Download MendeleyCrystal structure of the reduced state of the thiol-disulfide reductase SdbA from Streptococcus gordonii
Stogios, P.J.To be published.
5UM7
Crystal structure of the reduced state of the thiol-disulfide reductase SdbA from Streptococcus gordonii
- PDB DOI: https://doi.org/10.2210/pdb5UM7/pdb
- Classification: OXIDOREDUCTASE
- Organism(s): Streptococcus gordonii str. Challis substr. CH1
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2017-01-26 Released: 2017-02-15
- Funding Organization(s): National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.62 Å
- R-Value Free: 0.292
- R-Value Work: 0.238
- R-Value Observed: 0.246
wwPDB Validation 3D Report Full Report
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Thioredoxin signature protein | 187 | Streptococcus gordonii str. Challis substr. CH1 | Mutation(s): 0 Gene Names: SGO_2006 |  | |
UniProt | |||||
Find proteins for A8AZP5 (Streptococcus gordonii (strain Challis / ATCC 35105 / BCRC 15272 / CH1 / DL1 / V288)) Explore A8AZP5 Go to UniProtKB: A8AZP5 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A8AZP5 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| ACT Query on ACT | C [auth A] | ACETATE ION C2 H3 O2 QTBSBXVTEAMEQO-UHFFFAOYSA-M |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.62 Å
- R-Value Free: 0.292
- R-Value Work: 0.238
- R-Value Observed: 0.246
- Space Group: C 2 2 21
- Diffraction Data: https://doi.org/10.18430/M35UM7
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 49.25 | α = 90 |
| b = 49.32 | β = 90 |
| c = 196.54 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| XDS | data reduction |
| Aimless | data scaling |
| BALBES | phasing |
| PHENIX | model building |
| Coot | model building |
Entry History & Funding Information
Deposition Data
- Released Date: 2017-02-15 Deposition Author(s): Stogios, P.J., Evdokimova, E., Wawrzak, Z., Yim, V., Savchenko, A., Anderson, W.F., Center for Structural Genomics of Infectious Diseases (CSGID)
| Funding Organization | Location | Grant Number |
|---|---|---|
| National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID) | United States | HHSCN27220120026C |
Revision History (Full details and data files)
- Version 1.0: 2017-02-15
Type: Initial release - Version 1.1: 2017-09-27
Changes: Author supporting evidence - Version 1.2: 2019-12-11
Changes: Author supporting evidence, Database references - Version 1.3: 2023-10-04
Changes: Data collection, Database references, Refinement description
