Download MendeleyCrystal structure of sugar ABC transporter from Yersinia enterocolitica subsp. enterocolitica 8081
Nocek, B., Bigelow, L., Joachimiak, A.To be published.
5ULB
Crystal structure of sugar ABC transporter from Yersinia enterocolitica subsp. enterocolitica 8081
- PDB DOI: https://doi.org/10.2210/pdb5ULB/pdb
- Classification: SUGAR BINDING PROTEIN
- Organism(s): Yersinia enterocolitica subsp. enterocolitica 8081
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2017-01-24 Released: 2018-09-12
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.28 Å
- R-Value Free: 0.153
- R-Value Work: 0.110
- R-Value Observed: 0.112
This is version 2.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Putative sugar ABC transporter | 337 | Yersinia enterocolitica subsp. enterocolitica 8081 | Mutation(s): 0 |  | |
UniProt | |||||
Find proteins for A1JTX8 (Yersinia enterocolitica serotype O:8 / biotype 1B (strain NCTC 13174 / 8081)) Explore A1JTX8 Go to UniProtKB: A1JTX8 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A1JTX8 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| 8GG Query on 8GG | C [auth A] | 5-Se-methyl-5-seleno-beta-D-ribofuranose C6 H12 O4 Se UFNQFLPLDXICBS-KVTDHHQDSA-N |  | ||
| 8GA Query on 8GA | B [auth A] | 5-Se-methyl-5-seleno-alpha-D-ribofuranose C6 H12 O4 Se UFNQFLPLDXICBS-KAZBKCHUSA-N |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.28 Å
- R-Value Free: 0.153
- R-Value Work: 0.110
- R-Value Observed: 0.112
- Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 45.993 | α = 90 |
| b = 55.856 | β = 90 |
| c = 119.573 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| HKL-3000 | data reduction |
| HKL-3000 | data scaling |
| HKL-3000 | phasing |
Entry History
Deposition Data
- Released Date: 2018-09-12 Deposition Author(s): Nocek, B., Bigelow, L., Joachimiak, A., Center for Structural Genomics of Infectious Diseases (CSGID)
Revision History (Full details and data files)
- Version 1.0: 2018-09-12
Type: Initial release - Version 2.0: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Atomic model, Data collection, Derived calculations
