Download MendeleyCrystal structure of Alcohol dehydrogenase zinc-binding domain protein from Burkholderia ambifaria
Abendroth, J., Mayclin, S.J., Lorimer, D., Edwards, T.E.To be published.
5TNX
Crystal structure of Alcohol dehydrogenase zinc-binding domain protein from Burkholderia ambifaria
- PDB DOI: https://doi.org/10.2210/pdb5TNX/pdb
- Classification: OXIDOREDUCTASE
- Organism(s): Burkholderia ambifaria MC40-6
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2016-10-15 Released: 2016-11-09
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.70 Å
- R-Value Free: 0.172
- R-Value Work: 0.148
- R-Value Observed: 0.149
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Alcohol dehydrogenase zinc-binding domain protein | 383 | Burkholderia ambifaria MC40-6 | Mutation(s): 0 Gene Names: BamMC406_6306 |  | |
UniProt | |||||
Find proteins for B1Z4S6 (Burkholderia ambifaria (strain MC40-6)) Explore B1Z4S6 Go to UniProtKB: B1Z4S6 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | B1Z4S6 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| CIT Query on CIT | C [auth A] | CITRIC ACID C6 H8 O7 KRKNYBCHXYNGOX-UHFFFAOYSA-N |  | ||
| ZN Query on ZN | B [auth A] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |  | ||
| EDO Query on EDO | D [auth A], E [auth A], F [auth A], G [auth A], H [auth A] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.70 Å
- R-Value Free: 0.172
- R-Value Work: 0.148
- R-Value Observed: 0.149
- Space Group: I 2 2 2
- Diffraction Data: https://doi.org/10.18430/M35TNX
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 79.06 | α = 90 |
| b = 92.65 | β = 90 |
| c = 120.41 | γ = 90 |
| Software Name | Purpose |
|---|---|
| XDS | data reduction |
| XSCALE | data scaling |
| MOLREP | phasing |
| PHENIX | refinement |
| PDB_EXTRACT | data extraction |
| Coot | model building |
Entry History
Deposition Data
- Released Date: 2016-11-09 Deposition Author(s): Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Revision History (Full details and data files)
- Version 1.0: 2016-11-09
Type: Initial release - Version 1.1: 2017-11-22
Changes: Derived calculations, Refinement description - Version 1.2: 2023-10-04
Changes: Data collection, Database references, Refinement description
