Download MendeleyCrystal structure of a representative of class A beta-lactamase from Bacteroides cellulosilyticus DSM 14838
Nocek, B., Hatzos-Skintges, C., Babnigg, G., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)To be published.
5TFQ
Crystal structure of a representative of class A beta-lactamase from Bacteroides cellulosilyticus DSM 14838
- PDB DOI: https://doi.org/10.2210/pdb5TFQ/pdb
- Classification: HYDROLASE
- Organism(s): Bacteroides cellulosilyticus DSM 14838
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2016-09-26 Released: 2016-11-02
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.07 Å
- R-Value Free: 0.134
- R-Value Work: 0.115
- R-Value Observed: 0.116
wwPDB Validation 3D Report Full Report
This is version 1.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Beta-lactamase | 280 | Bacteroides cellulosilyticus DSM 14838 | Mutation(s): 0 Gene Names: BACCELL_03967 EC: 3.5.2.6 |  | |
UniProt | |||||
Find proteins for E2NI36 (Bacteroides cellulosilyticus DSM 14838) Explore E2NI36 Go to UniProtKB: E2NI36 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | E2NI36 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| PO4 Query on PO4 | B [auth A], C [auth A] | PHOSPHATE ION O4 P NBIIXXVUZAFLBC-UHFFFAOYSA-K |  | ||
| GOL Query on GOL | D [auth A], E [auth A] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.07 Å
- R-Value Free: 0.134
- R-Value Work: 0.115
- R-Value Observed: 0.116
- Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 55.837 | α = 90 |
| b = 62.808 | β = 90 |
| c = 87.058 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| HKL-3000 | data reduction |
| HKL-3000 | data scaling |
| SHELXCD | phasing |
Entry History
Deposition Data
- Released Date: 2016-11-02 Deposition Author(s): Nocek, B., Hatzos-Skintges, C., Babnigg, G., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
Revision History (Full details and data files)
- Version 1.0: 2016-11-02
Type: Initial release
