Download MendeleyCrystal structure of an inorganic pyrophosphatase from
Edwards, T.E., Horanyi, P.S., Seattle Structural Genomics Center for Infectious Disease (SSGCID)To be published.
5TEA
Crystal structure of an inorganic pyrophosphatase from Neisseria gonorrhoeae
- PDB DOI: https://doi.org/10.2210/pdb5TEA/pdb
- Classification: HYDROLASE
- Organism(s): Neisseria gonorrhoeae
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2016-09-20 Released: 2016-10-05
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.85 Å
- R-Value Free: 0.209
- R-Value Work: 0.170
- R-Value Observed: 0.170
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Inorganic pyrophosphatase | 185 | Neisseria gonorrhoeae | Mutation(s): 0 Gene Names: ppa EC: 3.6.1.1 |  | |
UniProt | |||||
Find proteins for Q9K0G4 (Neisseria meningitidis serogroup B (strain MC58)) Explore Q9K0G4 Go to UniProtKB: Q9K0G4 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q9K0G4 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| CA Query on CA | G [auth A] I [auth B] L [auth C] N [auth D] P [auth E] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |  | ||
| CL Query on CL | H [auth A] J [auth B] K [auth B] M [auth C] O [auth D] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.85 Å
- R-Value Free: 0.209
- R-Value Work: 0.170
- R-Value Observed: 0.170
- Space Group: C 1 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 142.72 | α = 90 |
| b = 65.65 | β = 115.65 |
| c = 133.21 | γ = 90 |
| Software Name | Purpose |
|---|---|
| XSCALE | data scaling |
| PHENIX | refinement |
| PDB_EXTRACT | data extraction |
| XDS | data reduction |
| MOLREP | phasing |
Entry History
Deposition Data
- Released Date: 2016-10-05 Deposition Author(s): Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Revision History (Full details and data files)
- Version 1.0: 2016-10-05
Type: Initial release - Version 1.1: 2023-10-04
Changes: Data collection, Database references, Derived calculations, Refinement description
