5TDY

Structure of cofolded FliFc:FliGn complex from Thermotoga maritima


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.10 Å
  • R-Value Free: 0.217 
  • R-Value Work: 0.169 
  • R-Value Observed: 0.174 

wwPDB Validation   3D Report Full Report


This is version 1.4 of the entry. See complete history


Literature

Co-Folding of a FliF-FliG Split Domain Forms the Basis of the MS:C Ring Interface within the Bacterial Flagellar Motor.

Lynch, M.J.Levenson, R.Kim, E.A.Sircar, R.Blair, D.F.Dahlquist, F.W.Crane, B.R.

(2017) Structure 25: 317-328

  • DOI: https://doi.org/10.1016/j.str.2016.12.006
  • Primary Citation of Related Structures:  
    5TDY

  • PubMed Abstract: 

    The interface between the membrane (MS) and cytoplasmic (C) rings of the bacterial flagellar motor couples torque generation to rotation within the membrane. The structure of the C-terminal helices of the integral membrane protein FliF (FliF C ) bound to the N terminal domain of the switch complex protein FliG (FliG N ) reveals that FliG N folds around FliF C to produce a topology that closely resembles both the middle and C-terminal domains of FliG. The interface is consistent with solution-state nuclear magnetic resonance, small-angle X-ray scattering, in vivo interaction studies, and cellular motility assays. Co-folding with FliF C induces substantial conformational changes in FliG N and suggests that FliF and FliG have the same stoichiometry within the rotor. Modeling the FliF C :FliG N complex into cryo-electron microscopy rotor density updates the architecture of the middle and upper switch complex and shows how domain shuffling of a conserved interaction module anchors the cytoplasmic rotor to the membrane.


  • Organizational Affiliation

    Department of Chemistry and Chemical Biology, Cornell University, Ithaca, NY 14853, USA.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Flagellar M-ring protein
A, C
43Thermotoga maritima MSB8Mutation(s): 0 
Gene Names: TM_0221Tmari_0219
UniProt
Find proteins for Q9WY64 (Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8))
Explore Q9WY64 
Go to UniProtKB:  Q9WY64
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9WY64
Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Flagellar motor switch protein FliG
B, D
98Thermotoga maritima MSB8Mutation(s): 0 
Gene Names: fliGTM_0220
UniProt
Find proteins for Q9WY63 (Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8))
Explore Q9WY63 
Go to UniProtKB:  Q9WY63
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9WY63
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Modified Residues  1 Unique
IDChains TypeFormula2D DiagramParent
MSE
Query on MSE
A, C
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.10 Å
  • R-Value Free: 0.217 
  • R-Value Work: 0.169 
  • R-Value Observed: 0.174 
  • Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 49.18α = 90
b = 59.327β = 115.59
c = 51.722γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
HKL-2000data reduction
SCALEPACKdata scaling
PHASERphasing

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesT32GM008500
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesR01GM59544
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesP41GM103403
Department of Energy (DOE, United States)United StatesDE-AC02-06CH11357
National Science Foundation (NSF, United States)United StatesDMR-1332208
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesGM-103485

Revision History  (Full details and data files)

  • Version 1.0: 2017-01-25
    Type: Initial release
  • Version 1.1: 2017-02-22
    Changes: Database references
  • Version 1.2: 2017-09-20
    Changes: Author supporting evidence
  • Version 1.3: 2019-11-27
    Changes: Author supporting evidence
  • Version 1.4: 2020-01-29
    Changes: Data collection