5O5G
Robo1 Ig1 to 4 crystal form 1
- PDB DOI: https://doi.org/10.2210/pdb5O5G/pdb
- Classification: SIGNALING PROTEIN
- Organism(s): Homo sapiens
- Expression System: Homo sapiens
- Mutation(s): No
- Deposited: 2017-06-01 Released: 2018-01-17
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 3.03 Å
- R-Value Free: 0.258
- R-Value Work: 0.198
- R-Value Observed: 0.201
This is version 1.4 of the entry. See complete history.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Roundabout homolog 1 | 385 | Homo sapiens | Mutation(s): 0 Gene Names: ROBO1, DUTT1 |  | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q9Y6N7 (Homo sapiens) Explore Q9Y6N7 Go to UniProtKB: Q9Y6N7 | |||||
PHAROS: Q9Y6N7 GTEx: ENSG00000169855 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q9Y6N7 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| NAG Query on NAG | B [auth A] | 2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 3.03 Å
- R-Value Free: 0.258
- R-Value Work: 0.198
- R-Value Observed: 0.201
- Space Group: C 2 2 21
- Diffraction Data: https://doi.org/10.15785/SBGRID/503
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 44.156 | α = 90 |
| b = 99.711 | β = 90 |
| c = 238.673 | γ = 90 |
| Software Name | Purpose |
|---|---|
| BUSTER | refinement |
| XDS | data reduction |
| XSCALE | data scaling |
| PHASER | phasing |
Entry History
Deposition Data
- Released Date: 2018-01-17 Deposition Author(s): Aleksandrova, N., Gutsche, I., Kandiah, E., Avilov, S.V., Petoukhov, M.V., Seiradake, E., McCarthy, A.A.
Revision History (Full details and data files)
- Version 1.0: 2018-01-17
Type: Initial release - Version 1.1: 2018-02-14
Changes: Database references - Version 1.2: 2018-05-02
Changes: Data collection, Database references - Version 1.3: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Data collection, Derived calculations, Structure summary - Version 1.4: 2024-01-17
Changes: Data collection, Database references, Refinement description, Structure summary
