5O1M

Structure of Latex Clearing Protein LCP in the closed state


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.20 Å
  • R-Value Free: 0.223 
  • R-Value Work: 0.174 
  • R-Value Observed: 0.177 

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Literature

Structural and Functional Analysis of Latex Clearing Protein (Lcp) Provides Insight into the Enzymatic Cleavage of Rubber.

Ilcu, L.Rother, W.Birke, J.Brausemann, A.Einsle, O.Jendrossek, D.

(2017) Sci Rep 7: 6179-6179

  • DOI: https://doi.org/10.1038/s41598-017-05268-2
  • Primary Citation of Related Structures:  
    5O1L, 5O1M

  • PubMed Abstract: 

    Latex clearing proteins (Lcps) are rubber oxygenases that catalyse the extracellular cleavage of poly (cis-1,4-isoprene) by Gram-positive rubber degrading bacteria. Lcp of Streptomyces sp. K30 (Lcp K30 ) is a b-type cytochrome and acts as an endo-type dioxygenase producing C 20 and higher oligo-isoprenoids that differ in the number of isoprene units but have the same terminal functions, CHO-CH 2 - and -CH 2 -COCH 3 . Our analysis of the Lcp K30 structure revealed a 3/3 globin fold with additional domains at the N- and C-termini and similarities to globin-coupled sensor proteins. The haem group of Lcp K30 is ligated to the polypeptide by a proximal histidine (His198) and by a lysine residue (Lys167) as the distal axial ligand. The comparison of Lcp K30 structures in a closed and in an open state as well as spectroscopic and biochemical analysis of wild type and Lcp K30 muteins provided insights into the action of the enzyme during catalysis.


  • Organizational Affiliation

    Institute for Biochemistry, Albert-Ludwigs-Universität Freiburg, Albertstrasse 21, 79104, Freiburg, Germany.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Rubber oxygenase
A, B
371Streptomyces sp. K30Mutation(s): 0 
Gene Names: lcp
EC: 1.13
UniProt
Find proteins for Q3L8N0 (Streptomyces sp. (strain K30))
Explore Q3L8N0 
Go to UniProtKB:  Q3L8N0
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ3L8N0
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.20 Å
  • R-Value Free: 0.223 
  • R-Value Work: 0.174 
  • R-Value Observed: 0.177 
  • Space Group: P 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 54.863α = 74.25
b = 56.544β = 86.07
c = 63.861γ = 71.04
Software Package:
Software NamePurpose
REFMACrefinement
PDB_EXTRACTdata extraction
XDSdata reduction
Aimlessdata scaling
PHASERphasing

Structure Validation

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Ligand Structure Quality Assessment 


Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
German Research FoundationGermanyEi-520/5
Deutscher Akademischer AustauschdienstGermanyJe-152/18

Revision History  (Full details and data files)

  • Version 1.0: 2017-08-02
    Type: Initial release