5NBC

Structure of Prokaryotic Transcription Factors


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.70 Å
  • R-Value Free: 0.244 
  • R-Value Work: 0.215 
  • R-Value Observed: 0.217 

wwPDB Validation   3D Report Full Report


This is version 1.3 of the entry. See complete history


Literature

Structural and functional studies of the metalloregulator Fur identify a promoter-binding mechanism and its role inFrancisella tularensisvirulence.

Perard, J.Nader, S.Levert, M.Arnaud, L.Carpentier, P.Siebert, C.Blanquet, F.Cavazza, C.Renesto, P.Schneider, D.Maurin, M.Coves, J.Crouzy, S.Michaud-Soret, I.

(2018) Commun Biol 1: 93-93

  • DOI: https://doi.org/10.1038/s42003-018-0095-6
  • Primary Citation of Related Structures:  
    5NBC, 5NHK

  • PubMed Abstract: 

    Francisella tularensis is a Gram-negative bacterium causing tularaemia. Classified as possible bioterrorism agent, it may be transmitted to humans via animal infection or inhalation leading to severe pneumonia. Its virulence is related to iron homeostasis involving siderophore biosynthesis directly controlled at the transcription level by the ferric uptake regulator Fur, as presented here together with the first crystal structure of the tetrameric F. tularensis Fur in the presence of its physiological cofactor, Fe 2+ . Through structural, biophysical, biochemical and modelling studies, we show that promoter sequences of F. tularensis containing Fur boxes enable this tetrameric protein to bind them by splitting it into two dimers. Furthermore, the critical role of F. tularensis Fur in virulence and pathogenesis is demonstrated with a fur -deleted mutant showing an attenuated virulence in macrophage-like cells and mice. Together, our study suggests that Fur is an attractive target of new antibiotics that attenuate the virulence of F. tularensis .


  • Organizational Affiliation

    Univ. Grenoble Alpes, CNRS, CEA, BIG-LCBM, 38000, Grenoble, France. julien.perard@cea.fr.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Ferric uptake regulation protein
A, B, C, D
140Francisella tularensisMutation(s): 0 
Gene Names: furAV531_00680DR86_1441
UniProt
Find proteins for Q5NIN6 (Francisella tularensis subsp. tularensis (strain SCHU S4 / Schu 4))
Explore Q5NIN6 
Go to UniProtKB:  Q5NIN6
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ5NIN6
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.70 Å
  • R-Value Free: 0.244 
  • R-Value Work: 0.215 
  • R-Value Observed: 0.217 
  • Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 53.15α = 90
b = 90β = 93.48
c = 63.95γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
XSCALEdata scaling
SHELXCDphasing

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
French National Research AgencyFranceANR-11-BS07-0007 PepSiFUR

Revision History  (Full details and data files)

  • Version 1.0: 2018-05-16
    Type: Initial release
  • Version 1.1: 2018-10-10
    Changes: Data collection, Database references, Structure summary
  • Version 1.2: 2019-06-12
    Changes: Data collection, Structure summary
  • Version 1.3: 2019-10-16
    Changes: Data collection