5N9Q

Structure of A. thaliana RCD1(468-567)


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 300 
  • Conformers Submitted: 15 
  • Selection Criteria: structures with the lowest energy 

wwPDB Validation   3D Report Full Report


This is version 1.3 of the entry. See complete history


Literature

Arabidopsis RCD1 coordinates chloroplast and mitochondrial functions through interaction with ANAC transcription factors.

Shapiguzov, A.Vainonen, J.P.Hunter, K.Tossavainen, H.Tiwari, A.Jarvi, S.Hellman, M.Aarabi, F.Alseekh, S.Wybouw, B.Van Der Kelen, K.Nikkanen, L.Krasensky-Wrzaczek, J.Sipari, N.Keinanen, M.Tyystjarvi, E.Rintamaki, E.De Rybel, B.Salojarvi, J.Van Breusegem, F.Fernie, A.R.Brosche, M.Permi, P.Aro, E.M.Wrzaczek, M.Kangasjarvi, J.

(2019) Elife 8

  • DOI: https://doi.org/10.7554/eLife.43284
  • Primary Citation of Related Structures:  
    5N9Q

  • PubMed Abstract: 

    Reactive oxygen species (ROS)-dependent signaling pathways from chloroplasts and mitochondria merge at the nuclear protein RADICAL-INDUCED CELL DEATH1 (RCD1). RCD1 interacts in vivo and suppresses the activity of the transcription factors ANAC013 and ANAC017, which mediate a ROS-related retrograde signal originating from mitochondrial complex III. Inactivation of RCD1 leads to increased expression of mitochondrial dysfunction stimulon (MDS) genes regulated by ANAC013 and ANAC017. Accumulating MDS gene products, including alternative oxidases (AOXs), affect redox status of the chloroplasts, leading to changes in chloroplast ROS processing and increased protection of photosynthetic apparatus. ROS alter the abundance, thiol redox state and oligomerization of the RCD1 protein in vivo, providing feedback control on its function. RCD1-dependent regulation is linked to chloroplast signaling by 3'-phosphoadenosine 5'-phosphate (PAP). Thus, RCD1 integrates organellar signaling from chloroplasts and mitochondria to establish transcriptional control over the metabolic processes in both organelles.


  • Organizational Affiliation

    Organismal and Evolutionary Biology Research Programme, Faculty of Biological and Environmental Sciences, University of Helsinki, Helsinki, Finland.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Inactive poly [ADP-ribose] polymerase RCD1128Arabidopsis thalianaMutation(s): 0 
Gene Names: RCD1ATP8CEO1At1g32230F3C3.1
UniProt
Find proteins for Q8RY59 (Arabidopsis thaliana)
Explore Q8RY59 
Go to UniProtKB:  Q8RY59
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ8RY59
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 300 
  • Conformers Submitted: 15 
  • Selection Criteria: structures with the lowest energy 

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2018-03-14
    Type: Initial release
  • Version 1.1: 2019-05-08
    Changes: Data collection
  • Version 1.2: 2019-09-25
    Changes: Data collection, Database references
  • Version 1.3: 2023-06-14
    Changes: Database references, Other