5MY5

Tungstate binding protein - TupA - from Desulfovibrio alaskensis G20


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.40 Å
  • R-Value Free: 0.217 
  • R-Value Work: 0.176 
  • R-Value Observed: 0.178 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Highly selective tungstate transporter protein TupA from Desulfovibrio alaskensis G20.

Otrelo-Cardoso, A.R.Nair, R.R.Correia, M.A.S.Cordeiro, R.S.C.Panjkovich, A.Svergun, D.I.Santos-Silva, T.Rivas, M.G.

(2017) Sci Rep 7: 5798-5798

  • DOI: https://doi.org/10.1038/s41598-017-06133-y
  • Primary Citation of Related Structures:  
    5MY5

  • PubMed Abstract: 

    Molybdenum and tungsten are taken up by bacteria and archaea as their soluble oxyanions through high affinity transport systems belonging to the ATP-binding cassette (ABC) transporters. The component A (ModA/TupA) of these transporters is the first selection gate from which the cell differentiates between MoO 4 2- , WO 4 2- and other similar oxyanions. We report the biochemical characterization and the crystal structure of the apo-TupA from Desulfovibrio desulfuricans G20, at 1.4 Å resolution. Small Angle X-ray Scattering data suggests that the protein adopts a closed and more stable conformation upon ion binding. The role of the arginine 118 in the selectivity of the oxyanion was also investigated and three mutants were constructed: R118K, R118E and R118Q. Isothermal titration calorimetry clearly shows the relevance of this residue for metal discrimination and oxyanion binding. In this sense, the three variants lost the ability to coordinate molybdate and the R118K mutant keeps an extremely high affinity for tungstate. These results contribute to an understanding of the metal-protein interaction, making it a suitable candidate for a recognition element of a biosensor for tungsten detection.


  • Organizational Affiliation

    UCIBIO/REQUIMTE, Departamento de Química, Faculdade de Ciências e Tecnologia, Universidade Nova de Lisboa, 2829-516, Caparica, Portugal.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
ABC transporter periplasmic substrate-binding protein274Oleidesulfovibrio alaskensis G20Mutation(s): 2 
Gene Names: Dde_0234
UniProt
Find proteins for Q316W1 (Oleidesulfovibrio alaskensis (strain ATCC BAA-1058 / DSM 17464 / G20))
Explore Q316W1 
Go to UniProtKB:  Q316W1
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ316W1
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.40 Å
  • R-Value Free: 0.217 
  • R-Value Work: 0.176 
  • R-Value Observed: 0.178 
  • Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 52.323α = 90
b = 42.53β = 95.45
c = 54.753γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
XDSdata reduction
Aimlessdata scaling
PHASERphasing

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
FCT/MCTESPortugalEXPL/BBB-BEP/0274/2012
FCT/MCTESPortugalPTDC/QEQ-MED/1902/2014
FCT/MCTESPortugalSFRH/BD/85806/2012

Revision History  (Full details and data files)

  • Version 1.0: 2017-08-02
    Type: Initial release
  • Version 1.1: 2024-01-17
    Changes: Data collection, Database references, Derived calculations, Refinement description