Download MendeleyCrystal structure of L5 protease Lysobacter sp. XL1
Gabdulkhakov, A., Tishchenko, S., Lisov, A., Leontievsky, A.To be published.
5MRT
Crystal structure of L5 protease Lysobacter sp. XL1
- PDB DOI: https://doi.org/10.2210/pdb5MRT/pdb
- Classification: HYDROLASE
- Organism(s): Lysobacter sp. XL1
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2016-12-26 Released: 2018-01-17
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.60 Å
- R-Value Free: 0.227
- R-Value Work: 0.168
- R-Value Observed: 0.170
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Lytic endopeptidase preproenzyme | 205 | Lysobacter sp. XL1 | Mutation(s): 0 Gene Names: alpB |  | |
UniProt | |||||
Find proteins for D2K8B4 (Lysobacter sp. (strain XL1)) Explore D2K8B4 Go to UniProtKB: D2K8B4 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | D2K8B4 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 4 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| GOL Query on GOL | I [auth B] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | ||
| FMT Query on FMT | C [auth A] D [auth A] E [auth A] F [auth A] K [auth B] | FORMIC ACID C H2 O2 BDAGIHXWWSANSR-UHFFFAOYSA-N |  | ||
| CL Query on CL | J [auth B] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |  | ||
| NA Query on NA | G [auth A], H [auth A] | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.60 Å
- R-Value Free: 0.227
- R-Value Work: 0.168
- R-Value Observed: 0.170
- Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 62.549 | α = 90 |
| b = 66.668 | β = 90 |
| c = 96.642 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| PROTEUM PLUS | data reduction |
| PROTEUM PLUS | data scaling |
| PHASER | phasing |
Entry History
Deposition Data
- Released Date: 2018-01-17 Deposition Author(s): Gabdulkhakov, A., Tishchenko, S., Lisov, A., Leontievsky, A.
Revision History (Full details and data files)
- Version 1.0: 2018-01-17
Type: Initial release - Version 1.1: 2024-01-17
Changes: Data collection, Database references, Derived calculations, Refinement description
