Download MendeleyApo form of the soluble PQQ-dependent Glucose Dehydrogenase from Acinetobacter calcoaceticus
Stines-Chaumeil, C., Mavre, F., Limoges, B., Kauffmann, B., Mano, N.To be published.
5MIN
Apo form of the soluble PQQ-dependent Glucose Dehydrogenase from Acinetobacter calcoaceticus
- PDB DOI: https://doi.org/10.2210/pdb5MIN/pdb
- Classification: OXIDOREDUCTASE
- Organism(s): Acinetobacter calcoaceticus
- Expression System: Escherichia coli BL21
- Mutation(s): No
- Deposited: 2016-11-28 Released: 2017-12-20
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.76 Å
- R-Value Free: 0.214
- R-Value Work: 0.178
- R-Value Observed: 0.179
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Quinoprotein glucose dehydrogenase B | 453 | Acinetobacter calcoaceticus | Mutation(s): 0 Gene Names: gdhB EC: 1.1.5.2 |  | |
UniProt | |||||
Find proteins for P13650 (Acinetobacter calcoaceticus) Explore P13650 Go to UniProtKB: P13650 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P13650 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| CA Query on CA | C [auth A] D [auth A] E [auth A] G [auth B] H [auth B] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |  | ||
| CL Query on CL | F [auth A] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.76 Å
- R-Value Free: 0.214
- R-Value Work: 0.178
- R-Value Observed: 0.179
- Space Group: P 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 54.407 | α = 88.04 |
| b = 54.898 | β = 81.58 |
| c = 85.474 | γ = 69.62 |
| Software Name | Purpose |
|---|---|
| XSCALE | data scaling |
| PHASER | phasing |
| BUSTER-TNT | refinement |
| PDB_EXTRACT | data extraction |
| XSCALE | data reduction |
| PHASER | phasing |
| BUSTER | refinement |
Entry History
Deposition Data
- Released Date: 2017-12-20 Deposition Author(s): Stines-Chaumeil, C., Mavre, F., Limoges, B., Kauffmann, B., Mano, N.
Revision History (Full details and data files)
- Version 1.0: 2017-12-20
Type: Initial release - Version 1.1: 2019-10-16
Changes: Data collection - Version 1.2: 2024-01-17
Changes: Data collection, Database references, Derived calculations, Refinement description
