5ME3

Structure of the Scc2 C-terminus


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.85 Å
  • R-Value Free: 0.269 
  • R-Value Work: 0.217 
  • R-Value Observed: 0.220 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Structure of the cohesin loader Scc2.

Chao, W.C.Murayama, Y.Munoz, S.Jones, A.W.Wade, B.O.Purkiss, A.G.Hu, X.W.Borg, A.Snijders, A.P.Uhlmann, F.Singleton, M.R.

(2017) Nat Commun 8: 13952-13952

  • DOI: https://doi.org/10.1038/ncomms13952
  • Primary Citation of Related Structures:  
    5ME3

  • PubMed Abstract: 

    The functions of cohesin are central to genome integrity, chromosome organization and transcription regulation through its prevention of premature sister-chromatid separation and the formation of DNA loops. The loading of cohesin onto chromatin depends on the Scc2-Scc4 complex; however, little is known about how it stimulates the cohesion-loading activity. Here we determine the large 'hook' structure of Scc2 responsible for catalysing cohesin loading. We identify key Scc2 surfaces that are crucial for cohesin loading in vivo. With the aid of previously determined structures and homology modelling, we derive a pseudo-atomic structure of the full-length Scc2-Scc4 complex. Finally, using recombinantly purified Scc2-Scc4 and cohesin, we performed crosslinking mass spectrometry and interaction assays that suggest Scc2-Scc4 uses its modular structure to make multiple contacts with cohesin.


  • Organizational Affiliation

    Structural Biology of Chromosome Segregation Laboratory, The Francis Crick Institute, 1 Midland Road, London NW1 1AT, UK.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Sister chromatid cohesion protein 2
A, B
1,143Eremothecium gossypii ATCC 10895Mutation(s): 0 
Gene Names: SCC2AGL133W
UniProt
Find proteins for Q750S2 (Eremothecium gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056))
Explore Q750S2 
Go to UniProtKB:  Q750S2
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ750S2
Sequence Annotations
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  • Reference Sequence

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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
unassigned sequence of Scc2C [auth X]17Eremothecium gossypii ATCC 10895Mutation(s): 0 
Sequence Annotations
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  • Reference Sequence
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Scc2 unassigned sequenceD [auth Y]27Eremothecium gossypii ATCC 10895Mutation(s): 0 
Sequence Annotations
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  • Reference Sequence

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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Scc2 unassigned sequenceE [auth Z],
F [auth W]
11Eremothecium gossypii ATCC 10895Mutation(s): 0 
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.85 Å
  • R-Value Free: 0.269 
  • R-Value Work: 0.217 
  • R-Value Observed: 0.220 
  • Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 98.049α = 90
b = 106.44β = 104.52
c = 143.183γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
xia2data reduction
Aimlessdata scaling
autoSHARPphasing

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Cancer Research UKUnited KingdomFC001155
Wellcome TrustUnited KingdomFC001155
Medical Research Council (United Kingdom)United KingdomFC001155

Revision History  (Full details and data files)

  • Version 1.0: 2017-01-11
    Type: Initial release
  • Version 1.1: 2017-01-18
    Changes: Database references
  • Version 1.2: 2017-08-30
    Changes: Author supporting evidence