Download MendeleyCrystal structure of alpha-L-arabinofuranosidase from Lactobacillus brevis
Linares-Pasten, J.A., Falck, P., Albasri, K., Kjellstrom, S., Adlercreutz, P., Logan, D.T., Nordberg Karlsson, E.To be published.
5M8B
Crystal structure of alpha-L-arabinofuranosidase from Lactobacillus brevis
- PDB DOI: https://doi.org/10.2210/pdb5M8B/pdb
- Classification: HYDROLASE
- Organism(s): Levilactobacillus brevis
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2016-10-28 Released: 2017-05-10
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.90 Å
- R-Value Free: 0.174
- R-Value Work: 0.146
- R-Value Observed: 0.147
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Beta-xylosidase | 346 | Levilactobacillus brevis | Mutation(s): 0 Gene Names: UCCLBBS449_1869 |  | |
UniProt | |||||
Find proteins for A0A5B7Y0Z3 (Levilactobacillus brevis) Explore A0A5B7Y0Z3 Go to UniProtKB: A0A5B7Y0Z3 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A0A5B7Y0Z3 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 5 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| 1PE Query on 1PE | G [auth A] | PENTAETHYLENE GLYCOL C10 H22 O6 JLFNLZLINWHATN-UHFFFAOYSA-N |  | ||
| PG4 Query on PG4 | J [auth B] | TETRAETHYLENE GLYCOL C8 H18 O5 UWHCKJMYHZGTIT-UHFFFAOYSA-N |  | ||
| PGE Query on PGE | E [auth A], F [auth A] | TRIETHYLENE GLYCOL C6 H14 O4 ZIBGPFATKBEMQZ-UHFFFAOYSA-N |  | ||
| TRS Query on TRS | D [auth A], I [auth B], K [auth B], L [auth B] | 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL C4 H12 N O3 LENZDBCJOHFCAS-UHFFFAOYSA-O |  | ||
| MG Query on MG | C [auth A], H [auth B] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.90 Å
- R-Value Free: 0.174
- R-Value Work: 0.146
- R-Value Observed: 0.147
- Space Group: H 3 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 132.148 | α = 90 |
| b = 132.148 | β = 90 |
| c = 266.925 | γ = 120 |
| Software Name | Purpose |
|---|---|
| BUSTER | refinement |
| XDS | data reduction |
| SCALA | data scaling |
| PHASER | phasing |
Entry History
Deposition Data
- Released Date: 2017-05-10 Deposition Author(s): Logan, D.T., Nordberg Karlsson, E., Linares-Pasten, J.A.
Revision History (Full details and data files)
- Version 1.0: 2017-05-10
Type: Initial release - Version 1.1: 2018-01-17
Changes: Data collection - Version 1.2: 2024-05-01
Changes: Data collection, Database references, Derived calculations, Refinement description, Source and taxonomy, Structure summary
