Download MendeleyCrystal structure Glucan 1,4-beta-glucosidase from Saccharopolyspora erythraea
Gabdulkhakov, A., Tishchenko, S.To be published.
5M6G
Crystal structure Glucan 1,4-beta-glucosidase from Saccharopolyspora erythraea
- PDB DOI: https://doi.org/10.2210/pdb5M6G/pdb
- Classification: HYDROLASE
- Organism(s): Saccharopolyspora erythraea D
- Expression System: Komagataella phaffii GS115
- Mutation(s): No
- Deposited: 2016-10-25 Released: 2017-11-29
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.83 Å
- R-Value Free: 0.203
- R-Value Work: 0.172
- R-Value Observed: 0.173
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Beta-glucosidase | 615 | Saccharopolyspora erythraea D | Mutation(s): 0 Gene Names: celD, SACE_6502, A8924_6851 EC: 3.2.1.74 |  | |
UniProt | |||||
Find proteins for A4FNP6 (Saccharopolyspora erythraea (strain ATCC 11635 / DSM 40517 / JCM 4748 / NBRC 13426 / NCIMB 8594 / NRRL 2338)) Explore A4FNP6 Go to UniProtKB: A4FNP6 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A4FNP6 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 4 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| SOR Query on SOR | L [auth A] | sorbitol C6 H14 O6 FBPFZTCFMRRESA-JGWLITMVSA-N |  | ||
| PGE Query on PGE | K [auth A] | TRIETHYLENE GLYCOL C6 H14 O4 ZIBGPFATKBEMQZ-UHFFFAOYSA-N |  | ||
| GOL Query on GOL | H [auth A], I [auth A], J [auth A] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | ||
| MG Query on MG | B [auth A] C [auth A] D [auth A] E [auth A] F [auth A] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.83 Å
- R-Value Free: 0.203
- R-Value Work: 0.172
- R-Value Observed: 0.173
- Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 64.292 | α = 90 |
| b = 75.717 | β = 90 |
| c = 113.893 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| XDS | data reduction |
| XDS | data scaling |
| PHASER | phasing |
Entry History
Deposition Data
- Released Date: 2017-11-29 Deposition Author(s): Gabdulkhakov, A., Tishchenko, S., Lisov, A., Leontievsky, A.
Revision History (Full details and data files)
- Version 1.0: 2017-11-29
Type: Initial release - Version 1.1: 2019-10-16
Changes: Data collection, Database references, Source and taxonomy, Structure summary - Version 1.2: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Derived calculations, Structure summary - Version 1.3: 2024-01-17
Changes: Data collection, Database references, Refinement description, Structure summary
