5LXU

Structure of the DNA-binding domain of LUX ARRHYTHMO


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.14 Å
  • R-Value Free: 0.232 
  • R-Value Work: 0.195 
  • R-Value Observed: 0.197 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Structure of the DNA-binding domain of LUX ARRHYTHMO

Zubieta, C.Silva, C.S.Lai, X.Wigge, P.Nanao, M.H.Nayak, A.

To be published.

Macromolecules

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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Transcription factor LUX57Arabidopsis thalianaMutation(s): 0 
Gene Names: LUXPCL1At3g46640F12A12.160
UniProt
Find proteins for Q9SNB4 (Arabidopsis thaliana)
Explore Q9SNB4 
Go to UniProtKB:  Q9SNB4
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9SNB4
Sequence Annotations
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  • Reference Sequence

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Entity ID: 2
MoleculeChains LengthOrganismImage
DNA (5'-D(*AP*TP*GP*CP*GP*TP*AP*TP*CP*TP*TP*AP*GP*AP*TP*AP*CP*GP*CP*A)-3')B [auth U]10Arabidopsis thaliana
Sequence Annotations
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  • Reference Sequence

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Entity ID: 3
MoleculeChains LengthOrganismImage
DNA (5'-D(*AP*TP*GP*CP*GP*TP*AP*TP*CP*TP*TP*AP*GP*AP*TP*AP*CP*GP*CP*A)-3')C [auth B]10Arabidopsis thaliana
Sequence Annotations
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  • Reference Sequence
Small Molecules
Modified Residues  1 Unique
IDChains TypeFormula2D DiagramParent
MSE
Query on MSE
A
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.14 Å
  • R-Value Free: 0.232 
  • R-Value Work: 0.195 
  • R-Value Observed: 0.197 
  • Space Group: P 1 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 42.16α = 90
b = 32.83β = 98.61
c = 53.76γ = 90
Software Package:
Software NamePurpose
XSCALEdata scaling
SHELXphasing
BUSTER-TNTrefinement
PDB_EXTRACTdata extraction
XDSdata reduction

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
ATIP-AvenirFrance--

Revision History  (Full details and data files)

  • Version 1.0: 2017-10-25
    Type: Initial release