Download MendeleyAn avidin mutant
Agrawal, N., Lehtonen, S.I., Riihimaki, T.A., Kulomaa, M.S., Hytonen, V.P., Johnson, M.S., Airenne, T.T.To be published.
5LUR
An avidin mutant
- PDB DOI: https://doi.org/10.2210/pdb5LUR/pdb
- Classification: biotin binding protein
- Organism(s): Gallus gallus
- Expression System: Escherichia coli BL21
- Mutation(s): Yes
- Deposited: 2016-09-09 Released: 2017-09-20
- Funding Organization(s): Academy of Finland
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.70 Å
- R-Value Free: 0.240
- R-Value Work: 0.177
- R-Value Observed: 0.180
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Avidin | 138 | Gallus gallus | Mutation(s): 12 Gene Names: AVD |  | |
UniProt | |||||
Find proteins for P02701 (Gallus gallus) Explore P02701 Go to UniProtKB: P02701 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P02701 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| STR Query on STR | C [auth A], D [auth B] | PROGESTERONE C21 H30 O2 RJKFOVLPORLFTN-LEKSSAKUSA-N |  | ||
| CL Query on CL | E [auth B] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.70 Å
- R-Value Free: 0.240
- R-Value Work: 0.177
- R-Value Observed: 0.180
- Space Group: P 21 21 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 76.13 | α = 90 |
| b = 80.35 | β = 90 |
| c = 43.42 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| XDS | data reduction |
| XSCALE | data scaling |
| PHASER | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2017-09-20 Deposition Author(s): Agrawal, N., Lehtonen, S.I., Riihimaki, T.A., Kulomaa, M.S., Hytonen, V.P., Johnson, M.S., Airenne, T.T.
| Funding Organization | Location | Grant Number |
|---|---|---|
| Academy of Finland | Finland | 257814,272283,136288,290506 |
Revision History (Full details and data files)
- Version 1.0: 2017-09-20
Type: Initial release - Version 1.1: 2024-01-17
Changes: Data collection, Database references, Refinement description
