Download MendeleyCrystal structure of the BRI1 kinase domain (865-1160) in complex with ATP from Arabidopsis thaliana
Bojar, D., Martinez, J., Hothorn, M.To be published.
5LPY
Crystal structure of the BRI1 kinase domain (865-1160) in complex with ATP from Arabidopsis thaliana
- PDB DOI: https://doi.org/10.2210/pdb5LPY/pdb
- Entry: 5LPY supersedes: 4OAB
- Classification: TRANSFERASE
- Organism(s): Arabidopsis thaliana
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): Yes
- Deposited: 2016-08-15 Released: 2016-08-24
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.30 Å
- R-Value Free: 0.248
- R-Value Work: 0.201
- R-Value Observed: 0.203
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Protein BRASSINOSTEROID INSENSITIVE 1 | 296 | Arabidopsis thaliana | Mutation(s): 1 Gene Names: BRI1, At4g39400, F23K16.30 EC: 2.7.10.1 (PDB Primary Data), 2.7.11.1 (PDB Primary Data) |  | |
UniProt | |||||
Find proteins for O22476 (Arabidopsis thaliana) Explore O22476 Go to UniProtKB: O22476 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | O22476 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| ATP Query on ATP | B [auth A] | ADENOSINE-5'-TRIPHOSPHATE C10 H16 N5 O13 P3 ZKHQWZAMYRWXGA-KQYNXXCUSA-N |  | ||
| Modified Residues 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| SEP Query on SEP | A | L-PEPTIDE LINKING | C3 H8 N O6 P |  | SER |
| TPO Query on TPO | A | L-PEPTIDE LINKING | C4 H10 N O6 P |  | THR |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.30 Å
- R-Value Free: 0.248
- R-Value Work: 0.201
- R-Value Observed: 0.203
- Space Group: P 62
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 115.823 | α = 90 |
| b = 115.823 | β = 90 |
| c = 49.898 | γ = 120 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| XDS | data reduction |
| XSCALE | data scaling |
| PHASER | phasing |
Entry History
Deposition Data
- Released Date: 2016-08-24 Deposition Author(s): Bojar, D., Martinez, J., Hothorn, M.
- This entry supersedes: 4OAB
Revision History (Full details and data files)
- Version 1.0: 2016-08-24
Type: Initial release - Version 1.1: 2024-01-10
Changes: Data collection, Database references, Derived calculations, Refinement description
