Download MendeleyCrystal structure of the de-sumoylating protease
Eckhoff, J., Dohmen, J., Pichlo, C., Baumann, U.To be published.
5LNB
Crystal structure of the de-sumoylating protease
- PDB DOI: https://doi.org/10.2210/pdb5LNB/pdb
- Classification: HYDROLASE
- Organism(s): Saccharomyces cerevisiae S288C
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2016-08-03 Released: 2017-08-16
- Funding Organization(s): German Research Foundation
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.30 Å
- R-Value Free: 0.197
- R-Value Work: 0.157
- R-Value Observed: 0.161
wwPDB Validation 3D Report Full Report
This is version 1.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Ubiquitin-like-specific protease 2 | A [auth B] | 310 | Saccharomyces cerevisiae S288C | Mutation(s): 0 Gene Names: ULP2, SMT4, YIL031W EC: 3.4.22.68 |  |
UniProt | |||||
Find proteins for P40537 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P40537 Go to UniProtKB: P40537 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P40537 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| ACT Query on ACT | B | ACETATE ION C2 H3 O2 QTBSBXVTEAMEQO-UHFFFAOYSA-M |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.30 Å
- R-Value Free: 0.197
- R-Value Work: 0.157
- R-Value Observed: 0.161
- Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 42.54 | α = 90 |
| b = 55.58 | β = 90 |
| c = 172.78 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| XDS | data reduction |
| XSCALE | data scaling |
| PHENIX | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2017-08-16 Deposition Author(s): Eckhoff, J., Dohmen, J., Pichlo, C., Baumann, U.
| Funding Organization | Location | Grant Number |
|---|---|---|
| German Research Foundation | Germany | -- |
Revision History (Full details and data files)
- Version 1.0: 2017-08-16
Type: Initial release
