Download MendeleyStructure of a new BC complex from Yersinia entomophaga
Busby, J.N., Hurst, M.R.H., Lott, J.S.To be published.
5KIS
YenB/RHS2 complex
- PDB DOI: https://doi.org/10.2210/pdb5KIS/pdb
- Classification: TOXIN
- Organism(s): Yersinia entomophaga
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2016-06-16 Released: 2017-08-09
- Funding Organization(s): Marsden Fund
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.40 Å
- R-Value Free: 0.260
- R-Value Work: 0.216
- R-Value Observed: 0.218
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| YenB | 1,491 | Yersinia entomophaga | Mutation(s): 0 Gene Names: yenB |  | |
UniProt | |||||
Find proteins for B6A880 (Yersinia entomophaga) Explore B6A880 Go to UniProtKB: B6A880 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | B6A880 | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| RHS2 | 965 | Yersinia entomophaga | Mutation(s): 0 Gene Names: RHS2 |  | |
UniProt | |||||
Find proteins for A0A2D0TC51 (Yersinia entomophaga) Explore A0A2D0TC51 Go to UniProtKB: A0A2D0TC51 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A0A2D0TC51 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| CA Query on CA | C [auth A], H [auth A] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |  | ||
| CL Query on CL | F [auth A], G [auth A], I [auth B], J [auth B] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |  | ||
| NA Query on NA | D [auth A], E [auth A] | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.40 Å
- R-Value Free: 0.260
- R-Value Work: 0.216
- R-Value Observed: 0.218
- Space Group: C 1 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 148.607 | α = 90 |
| b = 132.765 | β = 103.85 |
| c = 155.361 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
| XDS | data reduction |
| Aimless | data scaling |
| PHASER | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2017-08-09 Deposition Author(s): Busby, J.N., Hurst, M.R.H., Lott, J.S.
| Funding Organization | Location | Grant Number |
|---|---|---|
| Marsden Fund | New Zealand | UOA1406 |
Revision History (Full details and data files)
- Version 1.0: 2017-08-09
Type: Initial release - Version 1.1: 2023-09-27
Changes: Data collection, Database references, Derived calculations, Refinement description
