Download MendeleyCrystal structure of L-threonine 3-dehydrogenase from Burkholderia thailandensis
Abendroth, J., Lukacs, C.M., Lorimer, D.D., Edwards, T.E.To be published.
5KIA
Crystal structure of L-threonine 3-dehydrogenase from Burkholderia thailandensis
- PDB DOI: https://doi.org/10.2210/pdb5KIA/pdb
- Classification: OXIDOREDUCTASE
- Organism(s): Burkholderia thailandensis E264
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2016-06-16 Released: 2017-02-15
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.10 Å
- R-Value Free: 0.226
- R-Value Work: 0.175
- R-Value Observed: 0.179
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| L-threonine 3-dehydrogenase | 351 | Burkholderia thailandensis E264 | Mutation(s): 0 Gene Names: tdh, BTH_II0006 EC: 1.1.1.103 |  | |
UniProt | |||||
Find proteins for Q2T9E1 (Burkholderia thailandensis (strain ATCC 700388 / DSM 13276 / CCUG 48851 / CIP 106301 / E264)) Explore Q2T9E1 Go to UniProtKB: Q2T9E1 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q2T9E1 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| ZN Query on ZN | B [auth A] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |  | ||
| CA Query on CA | C [auth A], D [auth A] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.10 Å
- R-Value Free: 0.226
- R-Value Work: 0.175
- R-Value Observed: 0.179
- Space Group: I 41 2 2
- Diffraction Data: https://doi.org/10.18430/M35KIA
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 91.77 | α = 90 |
| b = 91.77 | β = 90 |
| c = 173.65 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| XDS | data reduction |
| XSCALE | data scaling |
| BALBES | phasing |
| PHASER | phasing |
| PHENIX | model building |
| Coot | model building |
| PDB_EXTRACT | data extraction |
Entry History
Deposition Data
- Released Date: 2017-02-15 Deposition Author(s): Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Revision History (Full details and data files)
- Version 1.0: 2017-02-15
Type: Initial release - Version 1.1: 2023-09-27
Changes: Data collection, Database references, Derived calculations, Refinement description
