5KH1

Shigella flexneri Effector IpaH1880


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.40 Å
  • R-Value Free: 0.305 
  • R-Value Work: 0.239 
  • R-Value Observed: 0.242 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Shigella flexneri Effector IpaH1880

Nishide, A.Mizushima, T.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Invasion plasmid antigen591Shigella flexneriMutation(s): 1 
Gene Names: ipaH_4SF1880
UniProt
Find proteins for Q83R64 (Shigella flexneri)
Explore Q83R64 
Go to UniProtKB:  Q83R64
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ83R64
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.40 Å
  • R-Value Free: 0.305 
  • R-Value Work: 0.239 
  • R-Value Observed: 0.242 
  • Space Group: C 2 2 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 56.316α = 90
b = 80.058β = 90
c = 298.346γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
PHASERphasing
BUCCANEERmodel building
HKL-2000data collection
HKL-2000data reduction
HKL-2000data scaling

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Grant-in-Aid for Scientific Research (B)Japan15H04341
Grant-in-Aid for JSPS FellowsJapan14J10879

Revision History  (Full details and data files)

  • Version 1.0: 2017-07-12
    Type: Initial release
  • Version 1.1: 2023-11-08
    Changes: Data collection, Database references, Refinement description