Download MendeleyStructure of a Putative Xyloglucanase from the Cellulolytic Bacteria Streptomyces sp. SirexAA-E, secreted, biomass degradation
Kositzke, A.W., Bianchetti, C.M.To be published.
5JWZ
Structure of a Putative Xyloglucanase from the Cellulolytic Bacteria Streptomyces sp. SirexAA-E
- PDB DOI: https://doi.org/10.2210/pdb5JWZ/pdb
- Classification: HYDROLASE
- Organism(s): Streptomyces sp. SirexAA-E
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2016-05-12 Released: 2016-06-01
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.70 Å
- R-Value Free: 0.169
- R-Value Work: 0.128
- R-Value Observed: 0.128
wwPDB Validation 3D Report Full Report
This is version 1.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Cellulose-binding family II | 724 | Streptomyces sp. SirexAA-E | Mutation(s): 0 Gene Names: SACTE_0562 |  | |
UniProt | |||||
Find proteins for G2NK78 (Streptomyces sp. (strain SirexAA-E / ActE)) Explore G2NK78 Go to UniProtKB: G2NK78 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | G2NK78 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| EDO Query on EDO | C [auth A], D [auth A], G [auth B] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | ||
| CA Query on CA | E [auth A], F [auth A], H [auth B] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.70 Å
- R-Value Free: 0.169
- R-Value Work: 0.128
- R-Value Observed: 0.128
- Space Group: C 1 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 104.149 | α = 90 |
| b = 140.181 | β = 113.92 |
| c = 116.711 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| HKL-2000 | data collection |
| PHASES | phasing |
| PDB_EXTRACT | data extraction |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
Entry History
Deposition Data
- Released Date: 2016-06-01 Deposition Author(s): Kositzke, A.W., Bianchetti, C.M.
Revision History (Full details and data files)
- Version 1.0: 2016-06-01
Type: Initial release
