5JNP

Crystal structure of a rice (Oryza Sativa) cellulose synthase plant conserved region (P-CR)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.40 Å
  • R-Value Free: 0.272 
  • R-Value Work: 0.240 
  • R-Value Observed: 0.243 

wwPDB Validation   3D Report Full Report


This is version 1.3 of the entry. See complete history


Literature

Rice Cellulose SynthaseA8 Plant-Conserved Region Is a Coiled-Coil at the Catalytic Core Entrance.

Rushton, P.S.Olek, A.T.Makowski, L.Badger, J.Steussy, C.N.Carpita, N.C.Stauffacher, C.V.

(2017) Plant Physiol 173: 482-494

  • DOI: https://doi.org/10.1104/pp.16.00739
  • Primary Citation of Related Structures:  
    5JNP

  • PubMed Abstract: 

    The crystallographic structure of a rice (Oryza sativa) cellulose synthase, OsCesA8, plant-conserved region (P-CR), one of two unique domains in the catalytic domain of plant CesAs, was solved to 2.4 Å resolution. Two antiparallel α-helices form a coiled-coil domain linked by a large extended connector loop containing a conserved trio of aromatic residues. The P-CR structure was fit into a molecular envelope for the P-CR domain derived from small-angle X-ray scattering data. The P-CR structure and molecular envelope, combined with a homology-based chain trace of the CesA8 catalytic core, were modeled into a previously determined CesA8 small-angle X-ray scattering molecular envelope to produce a detailed topological model of the CesA8 catalytic domain. The predicted position for the P-CR domain from the molecular docking models places the P-CR connector loop into a hydrophobic pocket of the catalytic core, with the coiled-coil aligned near the entrance of the substrate UDP-glucose into the active site. In this configuration, the P-CR coiled-coil alone is unlikely to regulate substrate access to the active site, but it could interact with other domains of CesA, accessory proteins, or other CesA catalytic domains to control substrate delivery.


  • Organizational Affiliation

    Department of Biological Sciences (P.S.R., C.N.S., N.C.C., C.V.S.), Department of Botany and Plant Pathology (A.T.O., N.C.C.), Bindley Bioscience Center (N.C.C., C.V.S.), and Purdue Center for Cancer Research (C.V.S.), Purdue University, West Lafayette, Indiana 47907.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Probable cellulose synthase A catalytic subunit 8 [UDP-forming]
A, B
128Oryza sativa Japonica GroupMutation(s): 0 
Gene Names: CESA8Os07g0208500LOC_Os07g10770OJ1136_A05.10OJ1559_F09.120OsJ_022567
EC: 2.4.1.12
UniProt
Find proteins for Q84ZN6 (Oryza sativa subsp. japonica)
Explore Q84ZN6 
Go to UniProtKB:  Q84ZN6
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ84ZN6
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.40 Å
  • R-Value Free: 0.272 
  • R-Value Work: 0.240 
  • R-Value Observed: 0.243 
  • Space Group: F 2 3
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 150.817α = 90
b = 150.817β = 90
c = 150.817γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
HKL-2000data scaling
PDB_EXTRACTdata extraction
HKL-2000data reduction
PHENIXphasing

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Department of Energy (DOE, United States)United StatesDE-SC0000997

Revision History  (Full details and data files)

  • Version 1.0: 2016-12-28
    Type: Initial release
  • Version 1.1: 2017-01-18
    Changes: Database references
  • Version 1.2: 2017-09-06
    Changes: Author supporting evidence
  • Version 1.3: 2019-12-04
    Changes: Author supporting evidence