Download MendeleyThe Crystal structure of the N-terminal domain of a novel cellulases from Bacteroides coprocola (CASP target)
Tan, K., Gu, M., Jedrzejczak, R., Joachimiak, A.To be published.
5JMB
The Crystal structure of the N-terminal domain of a novel cellulases from Bacteroides coprocola
- PDB DOI: https://doi.org/10.2210/pdb5JMB/pdb
- Classification: HYDROLASE
- Organism(s): Phocaeicola coprocola
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2016-04-28 Released: 2016-06-29
- Funding Organization(s): National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.05 Å
- R-Value Free: 0.231
- R-Value Work: 0.187
- R-Value Observed: 0.189
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Uncharacterized protein | 94 | Phocaeicola coprocola | Mutation(s): 0 |  | |
UniProt | |||||
Find proteins for B3JI28 (Phocaeicola coprocola DSM 17136) Explore B3JI28 Go to UniProtKB: B3JI28 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | B3JI28 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.05 Å
- R-Value Free: 0.231
- R-Value Work: 0.187
- R-Value Observed: 0.189
- Space Group: P 65 2 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 47.86 | α = 90 |
| b = 47.86 | β = 90 |
| c = 292.85 | γ = 120 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| HKL-3000 | data scaling |
| HKL-3000 | phasing |
| HKL-3000 | data reduction |
| SBC-Collect | data collection |
Entry History & Funding Information
Deposition Data
- Released Date: 2016-06-29 Deposition Author(s): Tan, K., Gu, M., Jedrzejczak, R., Joachimiak, A.
| Funding Organization | Location | Grant Number |
|---|---|---|
| National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) | United States | 115586 |
Revision History (Full details and data files)
- Version 1.0: 2016-06-29
Type: Initial release - Version 1.1: 2017-09-27
Changes: Author supporting evidence, Derived calculations - Version 1.2: 2019-12-04
Changes: Author supporting evidence
