Download MendeleyCrystal structure of a putative alpha-ketoglutarate dependent 2,4-D dioxygenase from Burkholderia xenovorans
Conrady, D.G., Dranow, D.M., Lorimer, D., Edwards, T.E.To be published.
5J92
Crystal structure of a putative alpha-ketoglutarate dependent 2,4-D dioxygenase from Burkholderia xenovorans
- PDB DOI: https://doi.org/10.2210/pdb5J92/pdb
- Classification: OXIDOREDUCTASE
- Organism(s): Paraburkholderia xenovorans LB400
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2016-04-08 Released: 2016-05-11
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.95 Å
- R-Value Free: 0.215
- R-Value Work: 0.176
- R-Value Observed: 0.178
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Putative alpha KG dependent 2,4-D dioxygenase | 309 | Paraburkholderia xenovorans LB400 | Mutation(s): 0 Gene Names: Bxe_B2152 EC: 1.14.11 |  | |
UniProt | |||||
Find proteins for Q13Q05 (Paraburkholderia xenovorans (strain LB400)) Explore Q13Q05 Go to UniProtKB: Q13Q05 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q13Q05 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| ACT Query on ACT | H [auth C] | ACETATE ION C2 H3 O2 QTBSBXVTEAMEQO-UHFFFAOYSA-M |  | ||
| FE2 Query on FE2 | E [auth A], F [auth B], G [auth C], I [auth D] | FE (II) ION Fe CWYNVVGOOAEACU-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.95 Å
- R-Value Free: 0.215
- R-Value Work: 0.176
- R-Value Observed: 0.178
- Space Group: P 1 21 1
- Diffraction Data: https://doi.org/10.18430/M35J92
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 84.7 | α = 90 |
| b = 77.88 | β = 92.11 |
| c = 92.14 | γ = 90 |
| Software Name | Purpose |
|---|---|
| XSCALE | data scaling |
| MOLREP | phasing |
| PHENIX | refinement |
| PDB_EXTRACT | data extraction |
| XDS | data reduction |
Entry History
Deposition Data
- Released Date: 2016-05-11 Deposition Author(s): Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Revision History (Full details and data files)
- Version 1.0: 2016-05-11
Type: Initial release - Version 1.1: 2023-09-27
Changes: Data collection, Database references, Derived calculations, Refinement description
