Download MendeleyStructure of translation elongation factor P from Acinetobacter baumannii
Abendroth, J., Horanyi, P.S., Lorimer, D.D., Edwards, T.E.To be published.
5J3B
Structure of translation elongation factor P from Acinetobacter baumannii
- PDB DOI: https://doi.org/10.2210/pdb5J3B/pdb
- Classification: TRANSLATION
- Organism(s): Acinetobacter baumannii
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2016-03-30 Released: 2016-05-04
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.30 Å
- R-Value Free: 0.237
- R-Value Work: 0.193
- R-Value Observed: 0.198
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Elongation factor P | 197 | Acinetobacter baumannii | Mutation(s): 0 Gene Names: efp |  | |
UniProt | |||||
Find proteins for V5VBC5 (Acinetobacter baumannii) Explore V5VBC5 Go to UniProtKB: V5VBC5 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | V5VBC5 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| K Query on K | D [auth B] | POTASSIUM ION K NPYPAHLBTDXSSS-UHFFFAOYSA-N |  | ||
| CL Query on CL | C [auth A], E [auth B] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.30 Å
- R-Value Free: 0.237
- R-Value Work: 0.193
- R-Value Observed: 0.198
- Space Group: C 1 2 1
- Diffraction Data: https://doi.org/10.18430/M35J3B
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 130.76 | α = 90 |
| b = 52.23 | β = 130.62 |
| c = 90.17 | γ = 90 |
| Software Name | Purpose |
|---|---|
| XDS | data reduction |
| XSCALE | data scaling |
| PHASER | phasing |
| Coot | model building |
| PHENIX | refinement |
| PDB_EXTRACT | data extraction |
Entry History
Deposition Data
- Released Date: 2016-05-04 Deposition Author(s): Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Revision History (Full details and data files)
- Version 1.0: 2016-05-04
Type: Initial release - Version 1.1: 2016-05-25
Changes: Source and taxonomy - Version 1.2: 2023-09-27
Changes: Data collection, Database references, Derived calculations, Refinement description
