Download MendeleyCrystal structure of beta-N-acetylglucosaminidase-like protein from Corynebacterium glutamicum
Chang, C., Mack, J., Endres, M., Joachimiak, A.To be published.
5IOB
Crystal structure of beta-N-acetylglucosaminidase-like protein from Corynebacterium glutamicum
- PDB DOI: https://doi.org/10.2210/pdb5IOB/pdb
- Classification: HYDROLASE
- Organism(s): Corynebacterium glutamicum ATCC 13032
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2016-03-08 Released: 2016-03-23
- Funding Organization(s): National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.25 Å
- R-Value Free: 0.257
- R-Value Work: 0.209
- R-Value Observed: 0.211
wwPDB Validation 3D Report Full Report
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Beta-glucosidase-related glycosidases | 348 | Corynebacterium glutamicum ATCC 13032 | Mutation(s): 0 Gene Names: Cgl2852 EC: 3.2.1.52 |  | |
UniProt | |||||
Find proteins for Q8NLT5 (Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / BCRC 11384 / JCM 1318 / LMG 3730 / NCIMB 10025)) Explore Q8NLT5 Go to UniProtKB: Q8NLT5 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q8NLT5 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 4 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| MES Query on MES | J [auth C], M [auth D], N [auth E], P [auth F] | 2-(N-MORPHOLINO)-ETHANESULFONIC ACID C6 H13 N O4 S SXGZJKUKBWWHRA-UHFFFAOYSA-N |  | ||
| SO4 Query on SO4 | K [auth C], Q [auth G] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
| GOL Query on GOL | I [auth A], L [auth C], O [auth E], S [auth G] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | ||
| CL Query on CL | R [auth G] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B, C, D, E A, B, C, D, E, F, G, H | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.25 Å
- R-Value Free: 0.257
- R-Value Work: 0.209
- R-Value Observed: 0.211
- Space Group: P 21 21 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 308.075 | α = 90 |
| b = 91.355 | β = 90 |
| c = 120.018 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| SCALEPACK | data scaling |
| PDB_EXTRACT | data extraction |
| HKL-3000 | data reduction |
| HKL-3000 | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2016-03-23 Deposition Author(s): Chang, C., Mack, J., Endres, M., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
| Funding Organization | Location | Grant Number |
|---|---|---|
| National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) | United States | GM115586 |
Revision History (Full details and data files)
- Version 1.0: 2016-03-23
Type: Initial release - Version 1.1: 2016-08-17
Changes: Structure summary - Version 1.2: 2017-09-20
Changes: Author supporting evidence, Derived calculations - Version 1.3: 2019-12-25
Changes: Author supporting evidence
