Download MendeleyCrystal structure of extracellular Cu/Zn Superoxide Dismutase from Onchocerca volvulus at 1.5 Angstrom; Insight into novel binding site and new inhibitors
Moustafa, A., Betzel, C., Perbandt, M.To be published.
5IN2
Crystal structure of extra cellular Cu/Zn Superoxide Dismutase from Onchocerca volvulus at 1.5 Angstrom; Insight into novel binding site and new inhibitors
- PDB DOI: https://doi.org/10.2210/pdb5IN2/pdb
- Classification: OXIDOREDUCTASE
- Organism(s): Onchocerca volvulus
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2016-03-07 Released: 2017-03-29
- Funding Organization(s): Minstry of Higher Education, DAAD
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.55 Å
- R-Value Free: 0.181
- R-Value Work: 0.160
- R-Value Observed: 0.161
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Extracellular superoxide dismutase [Cu-Zn] | 158 | Onchocerca volvulus | Mutation(s): 0 Gene Names: sod-4, sod2 EC: 1.15.1.1 |  | |
UniProt | |||||
Find proteins for Q07449 (Onchocerca volvulus) Explore Q07449 Go to UniProtKB: Q07449 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q07449 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 7 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| PGE Query on PGE | G [auth A] | TRIETHYLENE GLYCOL C6 H14 O4 ZIBGPFATKBEMQZ-UHFFFAOYSA-N |  | ||
| SO4 Query on SO4 | E [auth A] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
| GOL Query on GOL | B [auth A] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | ||
| ZN Query on ZN | C [auth A] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |  | ||
| CU Query on CU | D [auth A] | COPPER (II) ION Cu JPVYNHNXODAKFH-UHFFFAOYSA-N |  | ||
| AZI Query on AZI | H [auth A] | AZIDE ION N3 IVRMZWNICZWHMI-UHFFFAOYSA-N |  | ||
| CL Query on CL | F [auth A] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.55 Å
- R-Value Free: 0.181
- R-Value Work: 0.160
- R-Value Observed: 0.161
- Space Group: P 31 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 58.41 | α = 90 |
| b = 58.41 | β = 90 |
| c = 77.63 | γ = 120 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| XDS | data reduction |
| SCALA | data scaling |
| PHENIX | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2017-03-29 Deposition Author(s): Moustafa, A., Betzel, C., Perbandt, M.
| Funding Organization | Location | Grant Number |
|---|---|---|
| Minstry of Higher Education | Egypt | -- |
| DAAD | Germany | -- |
Revision History (Full details and data files)
- Version 1.0: 2017-03-29
Type: Initial release - Version 1.1: 2018-03-07
Changes: Data collection - Version 1.2: 2024-01-10
Changes: Data collection, Database references, Refinement description
